BAC Information

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BAC

Clone NameMSMg01-096K17
Chromosome9 (Build37)
Map Location 7,012,914 - 7,013,437
singlet/doubletsinglet
Overlap geneDync2h1
Upstream geneLOC664957, LOC676037, Pdgfd, Ddi1, EG664919, LOC100039400, LOC100039418, EG547034
Downstream geneLOC100039658, Dcun1d5, Mmp13, Mmp12, Mmp1b, Mmp3, Mmp1a, Mmp10, Mmp8, Mmp27, Mmp20, Mmp7, LOC665057, LOC100039782, Tmem123, Birc2, Birc3, Yap1, EG665090
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096K17.T7 (MSMg01no096_k17.b1)MSMg01-096K17.TJ (MSMg01no096_k17.g1)
ACCAG313292AG313293
length718707
length of high quality
(start - end)
322 (36 - 357)520 (55 - 574)
definitionCHROMAT_FILE: MSMg01no096_k17.b1 PHD_FILE: MSMg01no096_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:06 2005CHROMAT_FILE: MSMg01no096_k17.g1 PHD_FILE: MSMg01no096_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTATACGACTCCTATAGTCCGAGAATCCGCGGAATTCAAAGCT
AGTTTGCCTATATGAAACTAAAAAGAAAATTTCTTAAACTCTTAGTTTTA
TTTTAAAAATTATTTCATGTTTTGATATTATAAGATAATTACATAATTTC
TACCACTTTCTTTTCTCCTAACCTTCCTATATGCCCCTTGTTGCTCTCCT
TGAAATTTATAGCCTTTTTTTCCTTTAGTTGTTGTTGATGTTGTGGATGT
TGTTGGTATGTGTGTATTCCTAAGTCTGTAGGTATAATCTTCTCATTCTG
TGTAATGTTACTCATGTTTGGGTTTTCAGGCCTGAGCAGTTGGTACTAGA
TATCAGCTGGGCTGCTCTTCCCCGGGTAAGACTAGTTCTCGCACTCTTAG
TGTTCCTTACCTGCCTGTACATTTTTTTGTGTAGGGTTGAGGCCTCATGT
GCTTTCCCAGTCGGCTTTGTCATGTGTATTGCTGTTGACCTTCTTTGTTC
AGCTCATGTTAAGCAGCTGCATTAGTCAGGGTTCTCTAGAATCACATAAA
TTATGGTTGGCCTCTGTATACTAAGGTAATTCGCCGATGACTTACAGTCT
GCAGTCCAACTCCCAACAATGGTCTTTTGCAACTGTGTATCGCAACGCCC
TAGTTCTATCAGCTGCTCATTTTCGTATGTGCTTCCAGTCGAATCACATC
ACACTTCTCTTTCTTCCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTGAGCAACAGCAGAACACTGAGATCTTGGCAAAATAAGACTTCACA
ATGAGGTTCACAAATAGGGACAGGGGAAGGATCAGCAGGTTCATTCAAGT
TAGGTCAACAAAAGAACTCTGGGCATTGGCCTATAGTAAGTATCAAGGAA
CATAATAATAAATATGAAGAGAAACTCACTCACTCTATCAACAAAAAAAT
TACAGAAAAAAAGCACATATATTGTAGTAGTAAAGACCCCAGAATGTGAG
CAGGAATTCTGAATCTTGCCTGCACTTCCTCAGTGGCATCACTGTTATAT
CAATGTGACCACAGCAGCGGCCTCCTAATAGTGTCCAACTAGGTAGTAAG
ATTGCCTTGGTTAACTTCAGCAGAATGGTTCAGAGGGACCCACCAATAAT
TGCTGGTCATCTTTACCATTTTCTCTATGGCTACTGTAGTTCTACATAGT
TGTAAGGAAAATAGGTCACAAAAAAAAAAAAGGGAAAGGAGGAACAAACT
TTGGGAGCACATTTTCTTTCATCTCTACAAACAATACTTTGAGCTGAGCA
ACTAAAAATAATCTGGAGGAGGGAGCTACCACAGTAATTCTTTAGAATTT
TAAATGGAGGGATTTTATGTCCTTACTGCAGAAATACCCACACTATAATA
AGTTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_k17.g1 MSMg01no096_k17.g1 CHROMAT_FILE:
MSMg01no096_k17.g1 PHD_FILE: MSMg01no096_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:06 2005
         (520 letters)



>mm_chr9_7012714_7013637
          Length = 924

 Score =  957 bits (495), Expect = 0.0
 Identities = 516/525 (98%), Gaps = 6/525 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagc-aacagcagaacactgagatcttggcaaaataagacttcacaatgaggttcacaa 59
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagcaaacagcagaacactgagatcttggcaaaataagacttcacaatgaggttcacaa 260

                                                                       
Query: 60  atagggacaggggaaggatcagcaggttcattcaagttaggtcaacaaaagaactctggg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atagggacaggggaaggatcagcaggttcattcaagttaggtcaacaaaagaactctggg 320

                                                                       
Query: 120 cattggcctatagtaagtatcaaggaacataataataaatatgaagagaaactcactcac 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cattggcctatagtaagtatcaaggaacataataataaatatgaagagaaactcactcac 380

                                                                       
Query: 180 tctatcaacaaaaaaattacagaaaaaaagcacatatattgtagtagtaaagaccccaga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctatcaacaaaaaaattacagaaaaaaagcacatatattgtagtagtaaagaccccaga 440

                                                                       
Query: 240 atgtgagcaggaattctgaatcttgcctgcacttcctcagtggcatcactgttatatcaa 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtgagcaggaattctgaatcttgcctgcacttcctcagtggcatcactgttatatcaa 500

                                                                       
Query: 300 tgtgaccacagcagcggcctcctaatagtgtccaactaggtagtaagattgccttggtta 359
           ||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 tgcaaccacagcagcggcctcctaatagcgtccaactaggtagtaagattgccttggtta 560

                                                                       
Query: 360 acttcagcagaatggttcagagggacccaccaataattgctggtcatctttaccattttc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acttcagcagaatggttcagagggacccaccaataattgctggtcatctttaccattttc 620

                                                                       
Query: 420 tctatggctactgtagttctacatagttgtaaggaaaataggtcacaaaaaaaaaaaa-- 477
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  
Sbjct: 621 tctatggctactgtagttctacatagttgtaaggaaaataggtca-aaaaaaaaaaaaaa 679

                                                        
Query: 478 --gggaaaggaggaacaaactttgggagcacattttctttcatct 520
             |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aagggaaaggaggaacaaactttgggagcacattttctttcatct 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 924
Length adjustment: 10
Effective length of query: 510
Effective length of database: 914
Effective search space:   466140
Effective search space used:   466140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)