BAC Information

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BAC

Clone NameMSMg01-096M04
Chromosome9 (Build37)
Map Location 36,593,208 - 36,593,601
singlet/doubletsinglet
Overlap geneEi24
Upstream geneD730048I06Rik, 9230110F15Rik, LOC100041605, 9230113P08Rik, EG546123, LOC100041618, LOC100042485, EG639025, LOC671003, EG434396, A630095E13Rik, Acrv1, Chek1, Stt3a
Downstream geneLOC627681, Fez1, Pknox2, LOC100042545, 1810021J13Rik, Slc37a2, LOC100042561, Ccdc15, Hepacam, Robo4, Robo3, BC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096M04.T7 (MSMg01no096_m04.b1)MSMg01-096M04.TJ (MSMg01no096_m04.g1)
ACCAG313362AG313363
length714723
length of high quality
(start - end)
360 (45 - 404)378 (65 - 442)
definitionCHROMAT_FILE: MSMg01no096_m04.b1 PHD_FILE: MSMg01no096_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:14 2005CHROMAT_FILE: MSMg01no096_m04.g1 PHD_FILE: MSMg01no096_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAAGCCGCGGAA
TTCTTTGTTTATCCCTGAACCCCATTTTTAATAGGGTTATTTGATCTTCT
GGAGTCCATCTTCTTGAGTTCTTTATATATATTAGATATTACTCCCCTAT
CTGATTTAGAATTGGTAAAGATTTTTTTCCAATGTGTTGGTGGACTTTAT
TTCTTATTGATAGTGCCTTTTGCCTCATAGAAGCTTTGCAATTTTATGAG
GTCCCATTTGTCAATTCTTGATCTTACAGCACAAGCCATTGCTTTTCTGT
TCAGGAATTTTTCCCCTGTATGTATCTTCAAGGCTCTTCCCCACTTTCTC
CTCAAAAAGTTTCAGTGTCTCTGGCTTTACGTGCAGTTCCTTGATCCACT
TAGACTTGAAATTACTACAAGGAGATAAGAATGGATCAATTTGGCCGGAG
CACCTGGTGTAACCTTCCTGTTTCCCAGATCCCTCTTAGACTACTCTCCG
GACGCGATACTGTGCACTACTTAATCTAACCAGCTTCTGCGACAGGAATA
AGCGACACAGCTTCTGGGGTAGACACTTTTACGGTTTCTGAAATCACGGC
AACTTCTCTGCAATAGTATAGGTGTCTGCCTGGCCTGTGCGGCTACTGCT
AGAGTTTCAAGGTAGATTCATTCTGGTTTGCACAATCCTCTTAGCTAATC
CTGCTTATGTGTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTCCTCACATCAATTTTCAGTGCTCTTTGGGTGCTC
CCCCTGTTTGTGCTTAGCAAAGTTGTGAATGCCATTTGGTTCCAAGTACG
TGCAGGACAAAATGGAACTGGGTTCTACATGCTGGGTTGACTAGGTTACA
CATTTTAGCCTATGACGTTAGTGGCCTATAAAACTTAATCCAAGCAGTCA
GGTAATATTTGTGGTTTTGTAAAATGAAATTACTGTCTTGGGTTACTGAG
ACAGACTTTTCTCACCTGGCAGTTCTAGCAGCAAACCAGTGGCCTTAACT
CTGGGGATGAACACTGGGATTATTTAATCCATATTTTGCTATATTATTGT
TCTTTGTTTCACGATATAGCTGACTTGGCATTTGAAGTATCAGGGAGGAA
ACCTCATCCATTCCCCAGTGTCAGCAAAATAATTGCTGACATGCTCTTCA
ACCTTTTGCTACAGGCACTTTTCCTTATTCAGGGGAGAGACACATGGAGA
CATTTTTAAAAAGACAGGAAAGTTAGTGGGACGGTGCTCCACAAAGATAG
GCTTTTGCATCTATACAAAGATGGGGACCATGCATATATGCCTCTTGGCT
AGTAATGAATTTTTAAGCTCTCTGTGTGTGCGCGCTCTCCGCCTGTTTTC
CCTCTTTCCCTCTCTCTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_m04.g1 MSMg01no096_m04.g1 CHROMAT_FILE:
MSMg01no096_m04.g1 PHD_FILE: MSMg01no096_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:14 2005
         (378 letters)



>mm_chr9_36592838_36593615
          Length = 778

 Score =  673 bits (348), Expect = 0.0
 Identities = 375/394 (95%), Gaps = 16/394 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcctcacatcaattttcagtgctctttgggtgctccccctgtttgtgcttagcaaagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 ttcctcacatcaattttcagtgctctttgggtgctccccctgtttgtgcttagcaaagtt 705

                                                                       
Query: 61  gtgaatgccatttggttccaagtacgtgcaggacaaaatggaactgggttctacatgctg 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 704 gtgaatgccatttggttccaagtaggtgcaggacaaaatggaactgggttctacatgctg 645

                                                                       
Query: 121 ggttgactaggttacacattttagcctatgacgttagtggcctataaaacttaat----- 175
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
Sbjct: 644 ggttgactaggttacacattttagcctatgaagttagtggcctataaaacttaatcctta 585

                                                                       
Query: 176 -----------ccaagcagtcaggtaatatttgtggttttgtaaaatgaaattactgtct 224
                      |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 acgtttttaagccaagcagtcaggtaatatttgtggttttgtaaaatgaaattactgtct 525

                                                                       
Query: 225 tgggttactgagacagacttttctcacctggcagttctagcagcaaaccagtggccttaa 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tgggttactgagacagacttttctcacctggcagttctagcagcaaaccagtggccttaa 465

                                                                       
Query: 285 ctctggggatgaacactgggattatttaatccatattttgctatattattgttctttgtt 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ctctggggatgaacactgggattatttaatccatattttgctatattattgttctttgtt 405

                                             
Query: 345 tcacgatatagctgacttggcatttgaagtatca 378
           ||| ||||||||||||||||||||||||||||||
Sbjct: 404 tcaggatatagctgacttggcatttgaagtatca 371


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)