BAC Information

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BAC

Clone NameMSMg01-097P17
Chromosome9 (Build37)
Map Location 33,448,169 - 33,448,555
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC669759, LOC100041398, Ets1, LOC100041426
Downstream geneLOC100042343, Kirrel3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097P17.T7 (MSMg01no097_p17.b1)MSMg01-097P17.TJ (MSMg01no097_p17.g1)
ACCAG314278AG314279
length653660
length of high quality
(start - end)
387 (41 - 427)324 (55 - 378)
definitionCHROMAT_FILE: MSMg01no097_p17.b1 PHD_FILE: MSMg01no097_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:55 2005CHROMAT_FILE: MSMg01no097_p17.g1 PHD_FILE: MSMg01no097_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AACTCCTATATCGAGAGATCCGCGGAATTCATGGTTTACTTATTTTGCTC
ACTGATTTACTATTTTTCCAGTTTGTAAATATATATCTTCTACTTATTTG
TTGTATTTATATCTAAATCTGTAAGACATTTGTACGGAACATTTTTCATA
CCTTTGAAAACACTGTTTTCAAATTTACATAATTTATTCAATATCAATAT
ATGTAAATGCATTTGATCCTATATTGTATAACCTTGCTGTATAGATTATT
TGTTACAGAGGGTATATTCATTTTCCCACTTGGGGGCAGATCTCCTTAGA
GATATCTATGAAAAGAAGGTATTCTTTGATTCTAAAGCTTTACATCTTTC
ATGTTTCTGTATCCAGTTTAGTACAATGCTATTTTTCAATGAACTTTCCA
TCTGATGCTCATGACATATCTGTTGGTTCTTAGGTCTTAGTGTTAATGGC
TGAAAAAAAATACCACCCACACTTAACAGACCTCTCTCTAGATGAAATTG
TGGAGAACAGTGTCATTTATTTCTTAATTGCCGGTCAAATAACACCATAT
AACTATCTAGCTTGGTGCCTGCTTCTCTGCGAAGATAATACTTATTGCTC
ACGGACTTTCAAACTCCTGTTACAGGTAGCAAACTCACTAGAAAAAAAAA
GGA
GGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTGACTTTCAAAGACCTAATACAAATACTCTTCAAACTATTCCACAG
AATAGAAACAGAAGGAACACTACTGTTCTATGAAGCCACAATTACGCTGA
GTTTTCTTCCTTGAAGATGGAATGGTTTCTGTCTAATAAGGAACTTGTTA
CAATTTTCTTTCATAGAGGACTTCATAAGAGATATTTTTTTTTACTTCTA
TCATGTTTAACATTCCAATTAGATTTTTAAAAAGTCATTGAGAGCATATT
ACTTTAACTTCAGAAGATATCATGTATATTTAAGAGGCATTTGACTAATA
TAAATTATTTTTACAACTTAAAAATGCCAATACTGACTTGTATATTTTAA
AATAAATTTTATGAAGCTCAATAGCCCCAAAAGCACACCACCACACAGAG
GAGATGTTAATTTTGGCGAAATCTTTAGAGACTATAATGCATAGAATCAT
ATCACATCCACGGAACAAAAAAACAAGAACAACCATACCAACCACGCAAC
ACAAAGCTACTACCCCTAAGGCAACACCTTTCCCCCGATATGAAGCACTA
TATTGAATGAGCACCAATAGAATCCAGGCCTGTATCAGTTCACATCTTGA
CATAATTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_p17.b1 MSMg01no097_p17.b1 CHROMAT_FILE:
MSMg01no097_p17.b1 PHD_FILE: MSMg01no097_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:55 2005
         (387 letters)



>mm_chr9_33447969_33448755
          Length = 787

 Score =  725 bits (375), Expect = 0.0
 Identities = 384/387 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattttgctcactgatttactatttttccagtttgtaaatatatatcttctacttatttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattttgctcactgatttactatttttccagtttgtaaatatatatcttctacttatttg 260

                                                                       
Query: 61  ttgtatttatatctaaatctgtaagacatttgtacggaacatttttcatacctttgaaaa 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtatttatatctaaatttgtaagacatttgtacggaacatttttcatacctttgaaaa 320

                                                                       
Query: 121 cactgttttcaaatttacataatttattcaatatcaatatatgtaaatgcatttgatcct 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 cactgttttcaaatttacataatttatacaatatcaatatatgtaaatgcatttgatcct 380

                                                                       
Query: 181 atattgtataaccttgctgtatagattatttgttacagagggtatattcattttcccact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atattgtataaccttgctgtatagattatttgttacagagggtatattcattttcccact 440

                                                                       
Query: 241 tgggggcagatctccttagagatatctatgaaaagaaggtattctttgattctaaagctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgggggcagatctccttagagatatctatgaaaagaaggtattctttgattctaaagctt 500

                                                                       
Query: 301 tacatctttcatgtttctgtatccagtttagtacaatgctatttttcaatgaactttcca 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatatctttcatgtttctgtatccagtttagtacaatgctatttttcaatgaactttcca 560

                                      
Query: 361 tctgatgctcatgacatatctgttggt 387
           |||||||||||||||||||||||||||
Sbjct: 561 tctgatgctcatgacatatctgttggt 587


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)