BAC Information

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BAC

Clone NameMSMg01-098I06
Chromosome9 (Build37)
Map Location 38,781,460 - 38,781,577
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1
Downstream geneOlfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098I06.T7 (MSMg01no098_i06.b1)MSMg01-098I06.TJ (MSMg01no098_i06.g1)
ACCAG314676AG314677
length673786
length of high quality
(start - end)		119 (291 - 409)79 (224 - 302)
definitionCHROMAT_FILE: MSMg01no098_i06.b1 PHD_FILE: MSMg01no098_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:39 2005CHROMAT_FILE: MSMg01no098_i06.g1 PHD_FILE: MSMg01no098_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCATTCGAAGAGGATCCGCGGATTCTTTATTACCCTTGAAGGATTTCTAA
TTTAGACATGTAGGTTAGGACAATATGAGAGTATATTTGCAACTAGAGTC
AAGGCTATGTGATAATACATTCTCTGGTTTTATGTAAGAGGTGTTGATAT
TTCATTGACATTTGTCACCTAACTAACCACAAACTTAAGAGGAAGAGATA
TTGCCAATGAGAACTATTTTAGATTTCAAAGGATGATCCAGATTTCAAAG
CTTCTAGATGATATACTAGAGGAGGGACTTGTGGTCTCTTTGAAGTGAAA
AACTGAAGCATGGAGCTCATTCACAACAGGATTAAGCAAGAGAGTAATCT
CAGCAAAGAGTACATTATTTCAGAATTTTATATAATTTCTAGAAAATTGG
GTTTGAGATAACCATAGAAAAGGGAAAATAGATATTTCTGGCTTCAAAAG
ATTTTATCAAAAGGAATATTATATATTTGGAAAATCATGAAAGAATGTTC
TTCCCAAGCACTCTTTAAAGAAAAGAAGCCCATGTGTGTACCTATATTTC
TTATCATCCAGAACACAATCCACAAATAAATGGTACTAATGAATTCCAAC
GAGTGTTTTCAAAAAAGTCTCATAGCCATTGAGAGTTTGCATGAGCGTAT
GGAAATCTTATAGTAATCCCGAT

NCCCCNNNNNNCCCCCCCCCCCCCCTCCCCTCCCCCCCNTNTTNTAACAA
ATAACCCTTCTATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTACANAAGAAAATCATTCTTTTGGGATTAACAG
ACCAGCCTGTTACTCCAAATGCCTCTTTCCTTATTGCTTCTATTAATGTA
CATGATCACAGTATTTGGCAATTTGACTTTGATATTTTTAATTCTGTTAA
ATTCTCACCTACATACTCCCATGTATTTTTTTCTCTTGAATTTATCTTTT
GAAGATCTCTGTTACTCTTCTGTGATTACACCATAAACGCCTGATGAATT
CTATACTAATGAAGAACCTTATCTTTTTTTTGTGANGAATGCCCCAACTC
TACTTCTTTTGTTTTTTCTTACCCCCCCACCGCCATGTATTGGTGTCAAT
GCCCCCTGATCGCTATGTTGCCAATTGAAATAAACTGTTTTATAGGCCTG
CTTTGTTCCCCACCCTTGTGTTTCCTACCTCCTGCTTTGCTTCTTTTATT
TCCGTCATTCTTTCGTAGCCACTACCCACCTTTGTTCTTTCTGTTTCCAT
TTTTCCCTTTGTGCTTTTCCCCCACCTCCATTCCCCACACTCCTCGCATG
CCCTCCCCTTTTTGCCCACCCTCCCTGCTTTATTCCCCTTTTTCTCCCCC
TCACTCCCATTTTCCCCTTTTTCCGTTTCCTATTATTCTCTTTTTTTTCC
TTTTCTTCTTATATCTTCTCCTCCCTCCCTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_i06.b1 MSMg01no098_i06.b1 CHROMAT_FILE:
MSMg01no098_i06.b1 PHD_FILE: MSMg01no098_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:39 2005
         (119 letters)



>mm_chr9_38781260_38781778
          Length = 519

 Score =  221 bits (114), Expect = 2e-62
 Identities = 117/118 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaagtgaaaaactgaagcatggagctcattcacaacaggattaagcaagagagtaatct 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 318 tgaagtgaaaaactgaagcatggagctcattcacaacaggattaaacaagagagtaatct 259

                                                                     
Query: 61  cagcaaagagtacattatttcagaattttatataatttctagaaaattgggtttgaga 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cagcaaagagtacattatttcagaattttatataatttctagaaaattgggtttgaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 119
Length of database: 519
Length adjustment: 8
Effective length of query: 111
Effective length of database: 511
Effective search space:    56721
Effective search space used:    56721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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