BAC Information

Click to search

BAC

Clone NameMSMg01-098I15
Chromosome9 (Build37)
Map Location 96,209,759 - 96,210,195
singlet/doubletsinglet
Overlap geneTfdp2
Upstream geneChst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9, Pcolce2, Trpc1, AI427122, 1700065D16Rik, Xrn1, Gk5
Downstream gene1110029I05Rik, Atp1b3, BC043934, Rnf7, LOC667174, Rasa2, Zbtb38, EG622512, LOC100040230, LOC667216, Acpl2, LOC19034, LOC667226, Spsb4, LOC100040254, Slc25a36, EG622727, LOC384971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098I15.T7 (MSMg01no098_i15.b1)MSMg01-098I15.TJ (MSMg01no098_i15.g1)
ACCAG314694AG314695
length707764
length of high quality
(start - end)
422 (36 - 457)438 (118 - 555)
definitionCHROMAT_FILE: MSMg01no098_i15.b1 PHD_FILE: MSMg01no098_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:41 2005CHROMAT_FILE: MSMg01no098_i15.g1 PHD_FILE: MSMg01no098_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTCT
GTCCACCAGGTTGGCTGGGAACTCCTTTTGTCCCCTGCCTCTTGGTTTCT
GGGACAAAAGGCATGCACATTCCGCCCCCCCCCCCCCCACACACTTTATT
TATTTTTTAAAAGTAAAAAGCTTGGAAGGCAGAGGCAGGCAGATTTCTGA
GTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTTCAGGACAGCCAGAGCTA
CACAGAGAAACCCTGTCTTGAAAAACAAACAAAAAACTAAAAACAAAAAC
CAAAGTAAAAAGTAACAGCAAGATGGTCCCACAAGTAAAGGCACTTGCTG
GCAAGCCAGACCACCTGATTTTAATCCACGGAGCTTACATAGTATAGAAC
CAACTCCTGCAAGCTGCCTTGTGATCTCCACACACAAAAATACTCATGTA
CGTACACACACACACACACACTACTTCACTTTCACACACTCTTCTCCTCC
CTCTATGTTTTAATAATATTAAAACATTTTCTTTTTAGACGCATTTATTT
TATGTGTATGAGCGCTCTTGCTACTTGTATGTAATTGCCTATCTGTGTGC
AGAGTTTATTGTGCTCCTAACACGGTATCATATTCCCGGCTCATTACTTT
ATATGTTCGCACACAACTCTGAAGACGCTGCGCAACCGATCTGGTTCTTG
CTGAGTC
NNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCNCCCACATACCT
TNNTTCGATGATATGGGTGGCCTGGCGGCCGCCTTTCAAAAAGTTTAGGT
GACCTATAGATTCCCCGCGGAATTCCTAACAAGGTAAAACTCACTACTTG
AGGCCTGAACTGGAAGTCAGTTAGTTCTGTCCTTCCACAGAATATGTCCT
GGGGATCAAGCTTCAGCTATTTCTTGCTGTCCCTATCTTTGCTTCTTGAT
TGTTGCTCTGTATAGCCAGACATATGAACTGACTACCTTTCAAGGAAGTC
CTGATTGGTGCTGTGTACTTTTTATATGGCAATTTTTATTTGCTTGTGAC
AGATTCTCACTCTGTATTCTAGGCTTCCAAGTGATGGTATTTCAAGTACA
AGCCACCCTGCTCAGCCCTGTGACACTGACAAGATTTATTCTTTAGCTTC
TCAAGACAGGATTAACTGGGTTTGGTTTGTTTAAAATGTCTTCCATTTAA
TTCAAGTATGTTTAGCACAAGGGCCTCAAGTCCCAACTATCTAGAAGGAT
CTCTTGAGTCCAGCAGTTTAAGTTTAAACTACAGTGTGGTACAACCCATC
TTACAAGATAGGTCTTTATGCTTGACAGAAGTATGCTGTGTCTAGCCTGT
GACTCAGGAAAACGAATTTCGCATCCAAAATGGTTCCTCAAGACCAATCA
ACCCGTCTGTTAGAGATACAAACCCAGTCTAGAAAGGCTTTTCTCTATAA
CAAAGCTGAACACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_i15.g1 MSMg01no098_i15.g1 CHROMAT_FILE:
MSMg01no098_i15.g1 PHD_FILE: MSMg01no098_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:41 2005
         (438 letters)



>mm_chr9_96209557_96210395
          Length = 839

 Score =  783 bits (405), Expect = 0.0
 Identities = 429/437 (98%), Gaps = 1/437 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattcc-taacaaggtaaaactcactacttgaggcctgaactggaagtcagttagttct 61
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattccataacaaggtaaaactcactacttgaggcctgaactggaagtcagttagttct 262

                                                                       
Query: 62  gtccttccacagaatatgtcctggggatcaagcttcagctatttcttgctgtccctatct 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gtccttccacagaatatgtcctggggatcaagcttcagctatttcttgctgtccctatct 322

                                                                       
Query: 122 ttgcttcttgattgttgctctgtatagccagacatatgaactgactacctttcaaggaag 181
           ||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 323 ttgcttcttgattgttgttctgtatagctagacatctgaactgactacctttcaaggaag 382

                                                                       
Query: 182 tcctgattggtgctgtgtactttttatatggcaatttttatttgcttgtgacagattctc 241
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 383 tcctgattggtgctgtgtactttttatatggtaatttttatttgcttgtgacagattctc 442

                                                                       
Query: 242 actctgtattctaggcttccaagtgatggtatttcaagtacaagccaccctgctcagccc 301
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 actctgtagcctaggcttccaagtgatggtatttcaagtacaagccaccctgctcagccc 502

                                                                       
Query: 302 tgtgacactgacaagatttattctttagcttctcaagacaggattaactgggtttggttt 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgtgacactgacaagatttattctttagcttctcaagacaggattaactgggtttggttt 562

                                                                       
Query: 362 gtttaaaatgtcttccatttaattcaagtatgtttagcacaagggcctcaagtcccaact 421
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gttaaaaatgtcttccatttaattcaagtatgtttagcacaagggcctcaagtcccaact 622

                            
Query: 422 atctagaaggatctctt 438
           |||||||||||||||||
Sbjct: 623 atctagaaggatctctt 639


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 839
Length adjustment: 9
Effective length of query: 429
Effective length of database: 830
Effective search space:   356070
Effective search space used:   356070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)