Query= MSMg01no098_p06.b1 MSMg01no098_p06.b1 CHROMAT_FILE:
MSMg01no098_p06.b1 PHD_FILE: MSMg01no098_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:13 2005
(468 letters)
>mm_chr9_103595948_103596816
Length = 869
Score = 876 bits (453), Expect = 0.0
Identities = 465/469 (99%), Gaps = 1/469 (0%)
Strand = Plus / Plus
Query: 1 catgcctatagcctaattcaggtgccccaggtgaaataccatctctgaca-tacatctct 59
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 catgcctatagcctaattcaggtgccccaggtgaaataccatctctgacaatacatctct 260
Query: 60 ctctgtaggagaaaaagcttagaacaatgaattagctcttggagacactgccaaacaatc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctgtaggagaaaaagcttagaacaatgaattagctcttggagacactgccaaacaatc 320
Query: 120 ccacacatgcctggtgtccctttaggaacaatgccaatagtgggtaagggtgagtgcttg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccacacatgcctggtgtccctttaggaacaatgccaatagtgggtaagggtgagtgcttg 380
Query: 180 cttctaactgtgacaaccagactactcaagccagcaggtggagaaagatggaagctgctg 239
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttctagctgtgacaaccagactactcaagccagcaggtggagaaagatggaagctgctg 440
Query: 240 gaatatcctttctgctgcagcagactgatctccacaaggaaaaccaggcaagagctgcag 299
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 gaatatcctttctgctgcagcagactgatctccacaaggaaaaccaggcaatagctgcag 500
Query: 300 aaagggagagttgccaagttaggaaaggaaggactagaaaccagagtgggcctgggtaaa 359
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agagggagagttgccaagttaggaaaggaaggactagaaaccagagtgggcctgggtaaa 560
Query: 360 cagcagggcaggggtggacagcaagcaccctgtgggcaggggtggacagcatcctgtggg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagcagggcaggggtggacagcaagcaccctgtgggcaggggtggacagcatcctgtggg 620
Query: 420 caggggtggacagcatcctgtgggcaggggtggacagcatctatgtggg 468
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caggggtggacagcatcctgtgggcaggggtggacagcatctatgtggg 669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 869
Length adjustment: 10
Effective length of query: 458
Effective length of database: 859
Effective search space: 393422
Effective search space used: 393422
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no098_p06.g1 MSMg01no098_p06.g1 CHROMAT_FILE:
MSMg01no098_p06.g1 PHD_FILE: MSMg01no098_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:13 2005
(481 letters)
>mm_chr9_103661316_103662193
Length = 878
Score = 876 bits (453), Expect = 0.0
Identities = 473/481 (98%), Gaps = 3/481 (0%)
Strand = Plus / Minus
Query: 1 tctctgttgtttctgtcctcttagtcacggactaaggagagagattatagtcagagctgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 678 tctctgttgtttctgtcctcttagtcacggactaaggagagagattatagtcagacctgc 619
Query: 61 gtgtctaagcagccatgccctttgaggaggatctgtgtcacgttgtataaatataagagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gtgtctaagcagccatgccctttgaggaggatctgtgtcacgttgtataaatataagagc 559
Query: 121 cttcacgatggccggtgcctgggagaattccgtagggtgtgcactgtaagataaagctgg 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 558 cttcacgatggccggtgcctgggagaattccgtagggtgtgcactataagataaagctgg 499
Query: 181 cttacaccgccacaggtggggttctgggtaagctcatgtgttggtggaaaggagagccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 cttacaccgccacaggtggggttctgggtaagctcatgtgttggtggaaaggagagccag 439
Query: 241 ggatgactgaattcagccaggctcggctgcttgatggagtagtgatgttgtccaggcaga 300
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 438 ggatgactgaattcagccaggctctgctgcttgatggagt---gatgttgtccaggcaga 382
Query: 301 gcttctcgttatcggctagcctggctggccttcagaggaccatgctcatgtgacagaggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttctcgttatcggctagcctggctggccttcagaggaccatgctcatgtgacagaggc 322
Query: 361 tcctgcagagcgtatgggtctcaggccgtgtcagttatacctgtgatgcgctgtggaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 tcctgcagagcgtatgggtctcaggccgtgtcagttatacctgtgatgcactgtggaaaa 262
Query: 421 gaagagccccactaagacaaaaatacggatgcctgcctttccagtccttatctcctgcca 480
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 gaagagccccactaagacaaaaatacggatgcctgtctttccagtccttatctcctgcca 202
Query: 481 c 481
|
Sbjct: 201 c 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 878
Length adjustment: 10
Effective length of query: 471
Effective length of database: 868
Effective search space: 408828
Effective search space used: 408828
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
