BAC Information

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BAC

Clone NameMSMg01-099A11
Chromosome9 (Build37)
Map Location 38,929,189 - 38,929,492
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1
Downstream geneOlfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099A11.T7 (MSMg01no099_a11.b1)MSMg01-099A11.TJ (MSMg01no099_a11.g1)
ACCAG315060AG315061
length742718
length of high quality
(start - end)		321 (46 - 366)568 (76 - 643)
definitionCHROMAT_FILE: MSMg01no099_a11.b1 PHD_FILE: MSMg01no099_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:19 2005CHROMAT_FILE: MSMg01no099_a11.g1 PHD_FILE: MSMg01no099_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCATGTTCACTTCAATTTCCATTCTGGTATTAAGATCTTAATATA
GTAATCATGATTTCTCTAGCCATATATGCACCTTCCAGTTCTGCTAACAA
ACCAGTTTCAGAGCCTTGTGAATCACATGCTCCTGTATTCACAATGATCA
CAGCAATAAACTTGAATATGGTACTTATATTTTGTGCTAGTCAGAATTTA
TCCATCATGACTATAATACCCAGGAGAAATACACATATGAAAGTTGAAGG
GGCTTTGCTGTTGTTTGCTTGTTTTGTTTGTTTGTTTGGTTGGTTGGTTG
TTTTGTTTTGTTTTGTCTTGCTCCTCGAAAAAACTGCCATACTTCTCATC
AACCCAACTGTTTACCTCATTGCTTCATTCCACAACACAATTTAACCCAA
AACTATCCCTGTCTAAAAGAATTTTAAGGCACTACCTCATCCAACCAATC
ACCGTTCTTTTTTCCCGTATACCCTTCTAATCATAAGAATATCTCACAAA
TTAATTGCCCCCCCCCTCTATAACTTTCACATTACTATCAAACCTAATAT
CCCTTTTCTCTTTTTTCCCTCCCTTTCCCAGCCCCCTTTTCCACTGTCCA
CCCTCTTTTTATTCCCCCATATCCCTCCCCTTCTACATCTTCCCACATCT
TTATATATTATCCCTCCCCATCCTTTTTTTCTTTCTTTATTN

CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATGGACCAAGGGAAAGTGTCCTCT
GTGTTTTACACTACTGTTGTACCCATGCTGAACCCCTTGATCTACAGCCT
AAGGAATAAGGATGTTACAATTGCACTGAAGAAAACACTTGAAAGAAAAA
ATTTCATGTGGTCAGAAGTCACATAAATAATATTTCTTAGAGGAAAGTTA
TCTAGAGTACATCAATTGACTTGATACTGTTTATTTTACCTTACTCATTA
TTATTACTCATTTGATAGGATCTTTGATAACTTGTACTATTACAAATTTC
ACTTTAAAATTTAAGTCCCTAATATGTCATATGTTATTAAGAATCAACAT
TGTAAACAAAATAAGGAGAACATGGATCTTTATGCCCATAGGTGATAGCC
CATCATGGTATATTAGTTTTTCTTCACATTTGTAAACATTAATTAAAATT
GATAAATATCTTTCTTAATTACAACAAATGATATTATTTTAAACATCCTC
AATTGACTTTTGAGAATTTCATATGTAAGTGCTGTAATTACATCATTTTT
TCATCCCCCTCTAGCCACCTCCATTAACCCCCTGCTATCTCTCACATTAA
TGGACTGCTTTCCCTTTCGTTCATATATACCCATAAACAAATGGAATCTC
TTCTCAGTAACCATGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_a11.b1 MSMg01no099_a11.b1 CHROMAT_FILE:
MSMg01no099_a11.b1 PHD_FILE: MSMg01no099_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:19 2005
         (321 letters)



>mm_chr9_38928985_38929705
          Length = 721

 Score =  549 bits (284), Expect = e-161
 Identities = 298/304 (98%), Gaps = 3/304 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcatgttcacttcaatttccattctggtattaagatcttaatatagtaatcatg 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcatgttcatttcaatttccattctggtattaagatcttaatatagtaatcatg 264

                                                                       
Query: 65  atttctctagccatatatgcaccttccagttctgctaacaaaccagtttcagagccttgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atttctctagccatatatgcaccttccagttctgctaacaaaccagtttcagagccttgt 324

                                                                       
Query: 125 gaatcacatgctcctgtattcacaatgatcacagcaataaacttgaatatggtacttata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaatcacatgctcctgtattcacaatgatcacagcaataaacttgaatatggtacttata 384

                                                                       
Query: 185 ttttgtgctagtcagaatttatccatcatgactataatacccaggagaaatacacatatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttttgtgctagtcagaatttatccatcatgactataatacccaggagaaatacacatatg 444

                                                                       
Query: 245 aaagttgaaggggctttgctgttgtttgcttgttttgttt---gtttgtttggttggttg 301
           ||||||||||||||||| |||||||||||||||||| |||   |||||||||||||||||
Sbjct: 445 aaagttgaaggggcttttctgttgtttgcttgtttttttttttgtttgtttggttggttg 504

               
Query: 302 gttg 305
           ||||
Sbjct: 505 gttg 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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