BAC Information

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BAC

Clone NameMSMg01-099A23
Chromosome9 (Build37)
Map Location 93,316,926 - 93,317,388
singlet/doubletsinglet
Overlap geneLOC674371
Upstream genePlscr4, Plod2, LOC100039921, LOC100039931, LOC100039944, LOC667009, LOC100040114
Downstream geneLOC384967, EG384968
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099A23.T7 (MSMg01no099_a23.b1)MSMg01-099A23.TJ (MSMg01no099_a23.g1)
ACCAG315084AG315085
length7521,156
length of high quality
(start - end)
466 (43 - 508)---
definitionCHROMAT_FILE: MSMg01no099_a23.b1 PHD_FILE: MSMg01no099_a23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:21 2005CHROMAT_FILE: MSMg01no099_a23.g1 PHD_FILE: MSMg01no099_a23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTGACTTCCTGTTGCACATCATAGAATGTAAAATAACAAAGGGAAAT
ACAATAACATAACTTAAAAATCGTGATTTTTTTAATTGAATGAATGAAGC
CTATCTTAAAGGAGAGCATATTTTTGTAGAAAACTCTGGCTCTTTTCAAA
ATAGAAAACTAAAGGACCATGAAAATGTTAGAGATCACAAGGAGTTTGAG
GATATCAGCTAACAAAAACAATGACTTTATGAAATTGGATGACACTAGAA
AATATCATCCTGAGTGAAGTAACCCAGTCACAAAAGAACACACATAGTAT
GTACTCACTGATAAGTGGATATTCGACAAAAAGTTCAGAATTACCTAGAT
ACAGCTCACACACCATATGAAGCTCAAGAAGAAGGAAGAACAAAGTGTGA
ATGCTTCAGTCATACTTAGAAGGGGGAACAAAATAATCTACAGAGGGAGG
AAGGGATAGTAGAGGGAGAGAGGAGGGGGTGGTTCACCCTCCCCCCTTCT
TTTTCTTCTCTTTTCCCCCCCCCCCCTTTTTTTTCTCCCCCGCCCTCTCG
TTCCTTTTTTCCCCTTCTCCCTTCCTTTCTCTTCTTCCCCCCTCTCTTCT
CCCTTTCCTTTCCCCTCTATTCTTCTCTCTTCCCCACTCCCCTCCTCTTC
TTCTTCTCCCCCCATTTTCCTCTCCTCTCCCGTTCTCACTTATTCCTTTC
CN
GGCTTCTCCTTCCCGCGCGCGTTTTTTTTTGGGCTCGCGGCTGCTGTGGC
GCCCTCTCGCCTTGGTGGCCCTATTTCGTTGGCCCCATATCTATTCGGGG
TTCCGGGAGGGATTGTACCGCAACGGTGGTGGTCCAAATATTTAACGCGG
CGGATAATAAAATAAAGCTGGACCATAAAAAAACAATTAAGGGCAAATTT
ACGCCGCATAACACCAACACTTGGTTGTATTATTACGGGTGGAATAACTG
AGGGCCGGATTCGCGTGTTTTATGCTGTCCTCCCCACCGGTTCGGTCGTT
GCGCCCTAATATCGATCTGCTCCTGTCTTATTTCTTTATTATCACGCCGG
TAAACATAATTCCATATCGGCATAATATATAGCTGCGGCCCGCCCCCCGC
ATATTATTCTTTTACCCCCCACGAGCTCTTATATATTCATGTTATCCTCA
TTAATAATTTACCCGCGCCCACACTCTCGTGTATACAACCACGCATCCGC
CCTATTATTTAACGGATCGTATATATTAAAATTACAGAGTTACGGCATAA
TATCTGTACTGCGCAGCAGTTCTTGCTATGTACATATCATGCACGCGTCG
GGTTTTAACTCCGACTCATACGGTGTTTTATTTGTTCGCATAAAAAACCT
CGCTTGGTTAGACGCTCACGCGTGGTTTGCCCGTTATTCGAACATGCTCT
GCCTCTAATGCCGTAGAGCGAATTTTCGGACGATATTATCCTCCGCATCC
GTTATAATTTCCATTTCCACACTATAAACGCCCCCGGTATTTATGGCGCC
GGCGGACGCGACCGAATTTATTAGGCTGCCCGCCATATACACCCCCTCAC
ATCATTACATCAGACGCCAACAAAAAAACTACCATATTCTGGTTACATTC
CACACCAATTCTTAAAGCACACCAAATGAATTCGGTTCTCACGAAGGTGT
ATGAACGCTATTTTAAATTATTTCGCGGCAAGGGGAAAGGAGATATATGA
TACGAAGTAAGCGGCTGTTTTCCCGCGCTCAATTTATCCCCCTTTATTTA
TTTTTTTTGTCGCCATAATATTATACTAACCGCTGCCCGCTAATTTATAT
TTTTGTGCGGCCGCATGCACAACCTTATATATTATGCACACGCACTGCCT
TGTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_a23.b1 MSMg01no099_a23.b1 CHROMAT_FILE:
MSMg01no099_a23.b1 PHD_FILE: MSMg01no099_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:21 2005
         (466 letters)



>mm_chr9_93316722_93317588
          Length = 867

 Score =  793 bits (410), Expect = 0.0
 Identities = 450/466 (96%), Gaps = 7/466 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattgac---ttcctgttgcacatcatagaatgtaaaataacaaagggaaataca 61
           ||||||||||||   ||   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattgacaaatt---gttgcacatcatagaatgtaaaataacaaagggaaataca 261

                                                                       
Query: 62  ataacataacttaaaaatcgtgattttttt-aattgaatgaatgaagcctatcttaaagg 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 262 ataacataacttaaaaatcgtgattttttttaattgaatgaatgaagcctatcttaaagg 321

                                                                       
Query: 121 agagcatatttttgtagaaaactctggctcttttcaaaatagaaaactaaaggaccatga 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 322 agagcatatttttgtagaaaactatggctcttttcaaaatagaaaactaaaggaccatga 381

                                                                       
Query: 181 aaatgttagagatcacaaggagtttgaggatatcagctaacaaaaacaatgactttatga 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aaatgttagagatcacaaggattttgaggatatcagctaacaaaaacaatgactttatga 441

                                                                       
Query: 241 aattggatgacactagaaaatatcatcctgagtgaagtaacccagtcacaaaagaacaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 442 aattggatgacactagaaaatatcatcctgagtgaagtaacccagtcacaaaagaactca 501

                                                                       
Query: 301 catagtatgtactcactgataagtggatattcgacaaaaagttcagaattacctagatac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 catagtatgtactcactgataagtggatattcgacaaaaagttcagaattacctagatac 561

                                                                       
Query: 361 agctcacacaccatatgaagctcaagaagaaggaagaacaaagtgtgaatgcttcagtca 420
           ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| || 
Sbjct: 562 agctcacacaccatatgaagctcaagaagaaagaagaccaaagtgtgaatgcttcaatcc 621

                                                         
Query: 421 tacttagaagggggaacaaaataatctacagagggaggaagggata 466
           |||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 622 tacttagaaggtagaacaaaataatctacagagggaggaagggata 667


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 867
Length adjustment: 10
Effective length of query: 456
Effective length of database: 857
Effective search space:   390792
Effective search space used:   390792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)