MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-099I10
Chromosome	9 (Build37)
Map Location	71,565,081 - 71,565,299
singlet/doublet	singlet
Overlap gene	Cgnl1
Upstream gene	Adam10, Lipc, LOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2, Grinl1a, AA407270, LOC547043, LOC100040537
Downstream gene	Tcf12, EG666001, LOC665959, EG665964, LOC665970, Suhw4, LOC100041760, Mns1, LOC666007, Tex9, 4930509E16Rik, Rfxdc2, Nedd4, EG639396
Link	Open Mouse BAC browser

Click to get alignment info.

name	Adam10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11487 MGI:109548
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lipc (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15450 MGI:96216
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041622 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041622
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 mRNAs, 416 ESTs, 5 Proteins

name	LOC100041628 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041628
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 1 Protein

name	Aqp9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:64008 MGI:1891066
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700020I22Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72262 MGI:1919512
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	LOC100041660 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041660
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs

name	Aldh1a2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19378 MGI:107928
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Grinl1a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:28015 MGI:107282
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	AA407270 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:102371 MGI:2142908
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC547043 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:547043
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	LOC100040537 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040537
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins pseudo : _no_value

name	Cgnl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68178 MGI:1915428
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tcf12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21406 MGI:101877
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG666001 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666001 MGI:3648255
definition	note : predicted gene, EG666001 pseudo : _no_value

name	LOC665959 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665959
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 11 Proteins pseudo : _no_value

name	EG665964 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:665964 MGI:3644625
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 617 ESTs, 15 Proteins

name	LOC665970 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665970
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 20 Proteins pseudo : _no_value

name	Suhw4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:235469 MGI:2384583
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041760 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041760
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Mns1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17427 MGI:107933
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666007 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666007
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 42 ESTs, 12 Proteins pseudo : _no_value

name	Tex9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21778 MGI:1201610
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930509E16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75115 MGI:1922365
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	Rfxdc2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319758 MGI:2442675
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nedd4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17999 MGI:97297
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG639396 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:639396 MGI:3648991
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Adam10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142354069 GeneID:11487 MGI:109548
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : a disintegrin and metallopeptidase domain 10 transcript_id : NM_007399.2

name	Lipc (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982277 GeneID:15450 MGI:96216
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : lipase, hepatic transcript_id : NM_008280.2

name	LOC100041622 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260061 GeneID:100041622
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 mRNAs, 416 ESTs, 5 Proteins product : similar to RIKEN cDNA 1110014J01 gene transcript_id : XM_001477924.1

name	LOC100041628 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260063 GeneID:100041628
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 1 Protein product : hypothetical protein LOC100041628 transcript_id : XM_001477950.1

name	Aqp9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31542135 GeneID:64008 MGI:1891066
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : aquaporin 9 transcript_id : NM_022026.2

name	1700020I22Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260065 GeneID:72262 MGI:1919512
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : RIKEN cDNA 1700020I22 gene transcript_id : XM_980183.2

name	LOC100041660 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260066 GeneID:100041660
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs product : hypothetical protein LOC100041660 transcript_id : XM_001478002.1

name	Aldh1a2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144227213 GeneID:19378 MGI:107928
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : aldehyde dehydrogenase family 1, subfamily A2 transcript_id : NM_009022.3

name	Grinl1a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142359777 GeneID:28015 MGI:107282
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A transcript_id : NM_178602.2

name	AA407270 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142350194 GeneID:102371 MGI:2142908
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed sequence AA407270 transcript_id : NM_001033208.2

name	Cgnl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:56550078 GeneID:68178 MGI:1915428
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cingulin-like 1 transcript_id : NM_026599.4

name	Tcf12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142370916 GeneID:21406 MGI:101877
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transcription factor 12 transcript_id : NM_011544.2

name	EG665964 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260016 GeneID:665964 MGI:3644625
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 617 ESTs, 15 Proteins product : predicted gene, EG665964 transcript_id : XM_980604.2

name	Suhw4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110835724 GeneID:235469 MGI:2384583
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : suppressor of hairy wing homolog 4 (Drosophila) transcript_id : NM_146224.4

name	LOC100041760 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260069 GeneID:100041760
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100041760 transcript_id : XM_001478132.1

name	Mns1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892760 GeneID:17427 MGI:107933
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : meiosis-specific nuclear structural protein 1 transcript_id : NM_008613.2

name	Tex9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142379254 GeneID:21778 MGI:1201610
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : testis expressed gene 9 transcript_id : NM_009359.3

name	4930509E16Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260019 GeneID:75115 MGI:1922365
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : RIKEN cDNA 4930509E16 gene transcript_id : XM_001475016.1

name	Rfxdc2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:88703054 GeneID:319758 MGI:2442675
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : regulatory factor X domain containing 2 homolog (human) transcript_id : NM_001033536.1

name	Nedd4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:56699422 GeneID:17999 MGI:97297
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : neural precursor cell expressed, developmentally down-regulted gene 4 transcript_id : NM_010890.3

name	EG639396 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142348421 GeneID:639396 MGI:3648991
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG639396 transcript_id : NM_001039251.2

name	Adam10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680638 CCDS:CCDS23323.1 GeneID:11487 MGI:109548
definition	GO_component : GO:0009986 - cell surface [Evidence ISS]; GO:0005737 - cytoplasm [Evidence IDA]; GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA]; GO:0005794 - Golgi apparatus [Evidence ISS]; GO:0005798 - Golgi-associated vesicle [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0004175 - endopeptidase activity [Evidence IDA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IDA]; GO:0019901 - protein kinase binding [Evidence IDA]; GO:0005102 - receptor binding [Evidence ISS]; GO:0042169 - SH2 domain binding [Evidence NAS]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007267 - cell-cell signaling [Evidence ISS]; GO:0001701 - embryonic development (sensu Mammalia) [Evidence IMP]; GO:0006509 - membrane protein ectodomain proteolysis [Evidence ISS]; GO:0007162 - negative regulation of cell adhesion [Evidence ISS]; GO:0007220 - Notch receptor processing [Evidence NAS]; GO:0007219 - Notch signaling pathway [Evidence IEA]; GO:0006913 - nucleocytoplasmic transport [Evidence NAS]; GO:0006468 - protein amino acid phosphorylation [Evidence IDA] codon_start : 1 exception : mismatches in translation note : a disintegrin and metalloprotease domain (ADAM) 10 product : a disintegrin and metalloprotease domain 10 protein_id : NP_031425.1

name	Lipc (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982278 CCDS:CCDS23324.1 GeneID:15450 MGI:96216
definition	GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0008201 - heparin binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016298 - lipase activity [Evidence IDA]; GO:0005319 - lipid transporter activity [Evidence IEA]; GO:0004806 - triacylglycerol lipase activity [Evidence IEA] GO_process : GO:0016042 - lipid catabolism [Evidence IEA]; GO:0006629 - lipid metabolism [Evidence IEA] codon_start : 1 note : hepatic lipase product : lipase, hepatic protein_id : NP_032306.2

name	LOC100041622 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260062 GeneID:100041622
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477974.1

name	LOC100041628 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260064 GeneID:100041628
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478000.1

name	Aqp9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:11528512 CCDS:CCDS23325.1 GeneID:64008 MGI:1891066
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence TAS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005215 - transporter activity [Evidence IEA]; GO:0015250 - water channel activity [Evidence TAS] GO_process : GO:0006810 - transport [Evidence IEA]; GO:0006833 - water transport [Evidence TAS] codon_start : 1 product : aquaporin 9 protein_id : NP_071309.1

name	1700020I22Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94386215 GeneID:72262 MGI:1919512
definition	codon_start : 1 product : hypothetical protein LOC72262 protein_id : XP_985277.1

name	LOC100041660 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260067 GeneID:100041660
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478052.1

name	Aldh1a2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6677665 GeneID:19378 MGI:107928
definition	GO_function : GO:0004028 - 3-chloroallyl aldehyde dehydrogenase activity [Evidence IDA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0001758 - retinal dehydrogenase activity [Evidence IDA] GO_process : GO:0009952 - anterior/posterior pattern formation [Evidence IMP]; GO:0009855 - determination of bilateral symmetry [Evidence IMP]; GO:0035115 - embryonic forelimb morphogenesis [Evidence IMP]; GO:0030326 - embryonic limb morphogenesis [Evidence IMP]; GO:0001747 - eye development (sensu Mammalia) [Evidence IMP]; GO:0030900 - forebrain development [Evidence IMP]; GO:0030902 - hindbrain development [Evidence IMP]; GO:0008152 - metabolism [Evidence IEA]; GO:0016331 - morphogenesis of embryonic epithelium [Evidence IMP]; GO:0014032 - neural crest cell development [Evidence IMP]; GO:0030182 - neuron differentiation [Evidence IMP]; GO:0031016 - pancreas development [Evidence IMP]; GO:0008284 - positive regulation of cell proliferation [Evidence IMP]; GO:0009954 - proximal/distal pattern formation [Evidence IMP]; GO:0042573 - retinoic acid metabolism [Evidence IMP] [Evidence IDA]; GO:0048384 - retinoic acid receptor signaling pathway [Evidence IMP] codon_start : 1 note : retinaldehyde dehydrogenase 2; alcohol dehydrogenase family 1, subfamily A7; alcohol dehydrogenase family 1, subfamily A2 product : aldehyde dehydrogenase family 1, subfamily A2 protein_id : NP_033048.1

name	Grinl1a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30519919 CCDS:CCDS23326.1 GeneID:28015 MGI:107282
definition	GO_component : GO:0043025 - cell soma [Evidence IMP] GO_function : GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0051685 - maintenance of ER localization [Evidence IMP] codon_start : 1 product : glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A protein_id : NP_848717.1

name	AA407270 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701616 CCDS:CCDS23327.1 GeneID:102371 MGI:2142908
definition	codon_start : 1 product : hypothetical protein LOC102371 protein_id : NP_001028380.1

name	Cgnl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:56550079 CCDS:CCDS23328.1 GeneID:68178 MGI:1915428
definition	GO_component : GO:0015629 - actin cytoskeleton [Evidence IDA]; GO:0043296 - apical junction complex [Evidence IDA]; GO:0016459 - myosin [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0003774 - motor activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : junction-associated coiled-coil protein; paracingulin product : cingulin-like 1 protein_id : NP_080875.3

name	Tcf12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755730 CCDS:CCDS23329.1 GeneID:21406 MGI:101877
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0030528 - transcription regulator activity [Evidence IEA]; GO:0016563 - transcriptional activator activity [Evidence IDA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation product : transcription factor 12 protein_id : NP_035674.1

name	EG665964 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149260017 GeneID:665964 MGI:3644625
definition	codon_start : 1 product : similar to ubiquitin A-52 residue ribosomal protein fusion product 1 protein_id : XP_985698.2

name	Suhw4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84452159 GeneID:235469 MGI:2384583
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : suppressor of hairy wing homolog 4 protein_id : NP_666336.3

name	LOC100041760 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260070 GeneID:100041760
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478182.1

name	Mns1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678908 GeneID:17427 MGI:107933
definition	GO_component : GO:0005882 - intermediate filament [Evidence IDA]; GO:0005635 - nuclear envelope [Evidence IDA] codon_start : 1 product : meiosis-specific nuclear structural protein 1 protein_id : NP_032639.1

name	Tex9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110349993 GeneID:21778 MGI:1201610
definition	codon_start : 1 product : testis expressed gene 9 protein_id : NP_033385.2

name	4930509E16Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149260020 GeneID:75115 MGI:1922365
definition	codon_start : 1 product : hypothetical protein LOC75115 protein_id : XP_001475066.1

name	Rfxdc2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:88703055 GeneID:319758 MGI:2442675
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : regulatory factor X domain containing 2 homolog protein_id : NP_001028708.1

name	Nedd4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:56699423 GeneID:17999 MGI:97297
definition	GO_component : GO:0005829 - cytosol [Evidence IDA]; GO:0005622 - intracellular [Evidence IEA]; GO:0000151 - ubiquitin ligase complex [Evidence IPI] GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004842 - ubiquitin-protein ligase activity [Evidence IDA] [Evidence TAS] GO_process : GO:0006464 - protein modification [Evidence IEA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 note : neural precursor cell expressed, developmentally down-regulated gene 4a product : neural precursor cell expressed, developmentally down-regulated gene 4 protein_id : NP_035020.2

name	EG639396 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85986669 GeneID:639396 MGI:3648991
definition	codon_start : 1 product : hypothetical protein LOC639396 protein_id : NP_001034340.1

name	LOC547043 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:547043
definition	number : 3 pseudo : _no_value

name	LOC547043 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:547043
definition	number : 2 pseudo : _no_value

name	LOC547043 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:547043
definition	number : 1 pseudo : _no_value

name	LOC100040537 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040537
definition	number : 2 pseudo : _no_value

name	LOC100040537 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040537
definition	number : 1 pseudo : _no_value

name	LOC665959 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149260068 GeneID:665959
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 11 Proteins product : similar to ribosomal protein L7a pseudo : _no_value transcript_id : XR_033550.1

name	LOC665970 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149260018 GeneID:665970
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 20 Proteins product : similar to high mobility group box 1 pseudo : _no_value transcript_id : XR_032010.1

name	LOC666007 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149260071 GeneID:666007
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 42 ESTs, 12 Proteins product : similar to high-mobility group box 1 pseudo : _no_value transcript_id : XR_033569.1

clone name	MSMg01-358C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-166M09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-348F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-236N23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-378P18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-546C02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-211A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-163C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-316L02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-074N04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070L12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-404B22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-321L23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-485O05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-334P14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-069C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344B03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-336G09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429I15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-510D15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-481H06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-346G01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-404A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-202K16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-202K15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-343E17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-526J08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-195L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-195M21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-432M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-195N19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-519H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373O08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-171P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531M06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-444E23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-278C02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-151P08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-435P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-395H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-498D10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-503J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-098O02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-064E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-365K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-339P11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396H10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-127I24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-382I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383B16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-099I10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-090J21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-490I19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-104O06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-293L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-295L01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-142A08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-461I17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-451L12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-086P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261L01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-279C22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-528I01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-113M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-507G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-384M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-291O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-263D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524B13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-372K09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-160E16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-271I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-514G05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-156E19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-102A21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-150D11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317B03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-271P10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-499D06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-413H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-158D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-288N21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-358E23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-141M01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-088P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452L07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-065P24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464G17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-421K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-101F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-113D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-065O24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-276F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-475G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-049I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-090J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-173I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387E17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391A21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-422G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023N23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119L16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-052I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083H07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-091G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208I21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-096O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182E23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-329G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176B03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-040D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291G02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-243D04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-106D20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-290E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272A14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-074I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091P08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-062E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-172K03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-261D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302C16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-129C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211I01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-092F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231A04
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-099I10.T7 (MSMg01no099_i10.b1)	MSMg01-099I10.TJ (MSMg01no099_i10.g1)
ACC	AG315442	AG315443
length	760	902
length of high quality (start - end)	224 (45 - 268)	44 (55 - 98)
definition	CHROMAT_FILE: MSMg01no099_i10.b1 PHD_FILE: MSMg01no099_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:03 2005	CHROMAT_FILE: MSMg01no099_i10.g1 PHD_FILE: MSMg01no099_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:03 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGG AATTCTCCCTCTGAACGCAACAGTCTATTGGATCAGAAGAACAAATTGAT CCTAGAAGTGTCTGAACTACAGCAGCAACTGCAACTGGAGATGAAGGTAG CTGGCTTTTATATTTTTTCCCATTTCTGCCTTGGTAGCTAAAGGTTTGTT TTTTGTTTTGTTGTTGTTGTTTTGTTTGTTTTTGGTTTTTTGTTTTTTAA ACACATTGAGGTGTCCAGGTGAGGTGAAAGTCATTTTCACCCGCTGAAAG AATCATTCCTCTCATCCCAGATTTTTTTCCTTTGTATCTGGAGGCTGCTG GCCCAACAACTTTTTAAAGCACCTGCGCATACTTATACTGTTTGCTTCGA ACAAGCGAAATCCTGTCACACACTGCTTTTCTGATAGGAAACTTGTACTC GTCTTACTCCTCCGCTTTTATAATTATGCGACCCATACCCTATACCGCCC TCTAGCTTAGCGTGCCTCTGCTTTCATTTCACTAACTGTTACGTTTCACA ATTTTTAACCTCACACCATTTATCTCTTGCATTTACTTATACCTTCACTC TCCTGTTTTTCTTTTTATACTCTCTTACTTATCCCAGCCCTATACCCGCT ATCCCCTACTCTTTTTAAACCGCCTCTTACTTTCCTCATCTTTATCGTAT GCCTATCGCTTAATATCATATCTTCCTACCCCTGTCACTATTATACTCTC TCCCATCTTA	GGCGGCCGCCTGGTTCAAGAGATGXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXACTGGCCGTTGAATTAGTTAGGCTAGTGATGGGGGGGTGGGGGGGC CAACAATCACACCCCCCCATAAAAGAATAATCAAATAAAAGCATTAAAAA TAGAGCTCAGTTATACCGTCTGCGCGCCGCTCCTTGGGCCTGTTTTCTAT TGCGTGTGCCCACCATTTATAACACACTAATTCGGCGCGCTTTATATTAA GCTGCACTGACCTGCGCTGTCTTATAGTAGTGATACTTCCTTCTTGCCTC TGCTCTCTCTTCTCATTTCTAAAGTCACTATAAAAGATTATTTTTTTCTT CACTCCCCTCCAGGATTAGCTACATAATTTTTCTGGCGGCACCATGGTAT TTTTTTATACCCCCAACCACCCCCTTTTTTTCGCCATATATTACACACAT AAACAAAAAAGATCATAGACCCCCACCATGAATTATTAAATATACATATG ACGGCATAAGTAGGCAACCATATCGCCGACACTTATAATAAATATTTTCA ACACAAGCAACCGCTCTCTACTCATTAAAAACACCGCGTCCCGTCTCACT GTCTCCTCTTCACCACCACACCCGAAGTTCTATTACCTCTAATTAATATA TTTCTCCCCCCATACACTCTACATTCCATCCTACCTTTTCATCATCTCTC TCCTACCCTCAATTCCCGCTTCTCTATATAAATATCATTCTATCACTTGC CTACTCTATTATTATATCGGCGATCTCCATACCCCAATATACTTTACGAT CTGCCCTCCCGGTTATCTCACTAAACTGAACGGTCTCCACGAAGTACAAT ACCTCCCGACGCCGATTATAATATATCGCCACTAGACATACCCCCAAATA CG
quality values	Open. Hide. 10 12 12 10 10 12 19 41 59 39 33 33 33 33 30 28 28 28 35 28 33 37 37 37 46 28 28 25 23 22 14 19 12 21 15 12 12 13 13 10 11 11 11 13 19 22 25 30 47 36 36 36 36 36 33 59 59 59 59 30 30 16 10 9 9 9 10 10 21 25 25 27 33 33 39 43 48 48 48 39 39 39 37 37 28 23 28 28 30 29 31 31 42 42 37 48 48 43 43 43 43 47 57 57 48 48 48 48 54 54 48 50 48 48 43 43 43 46 46 44 39 37 31 30 30 30 32 32 43 42 43 43 43 48 57 57 44 44 37 42 42 46 46 46 44 44 48 48 57 57 57 59 57 57 54 54 57 57 57 57 57 68 68 57 57 59 57 59 57 57 57 57 57 57 57 57 57 54 54 57 44 43 27 27 43 44 52 54 57 59 57 57 57 52 43 43 43 33 33 35 43 43 43 43 43 36 36 43 43 28 24 24 21 21 32 43 32 26 15 13 13 24 26 27 32 24 32 14 14 14 24 38 32 19 19 24 32 32 32 27 27 32 27 35 42 42 46 47 47 57 44 42 42 27 24 19 27 31 27 27 23 32 28 36 24 24 12 10 10 13 16 11 12 11 12 12 18 22 20 20 20 20 20 15 26 19 29 28 32 31 42 33 43 33 26 19 11 11 11 10 9 12 14 17 17 22 25 36 20 19 14 18 15 21 28 37 26 21 13 12 12 16 12 12 15 20 28 30 30 39 39 26 22 10 10 10 17 10 10 8 8 8 8 8 9 9 10 16 12 12 13 13 19 15 15 15 11 10 10 10 10 16 13 15 13 15 12 12 12 11 8 8 7 6 8 8 10 13 16 16 9 9 9 10 9 12 18 22 17 17 17 20 25 28 32 32 23 17 15 13 13 13 15 15 14 14 30 27 32 14 10 10 8 8 10 10 9 9 9 10 14 12 10 13 13 11 11 9 13 11 14 18 11 12 12 11 12 11 11 12 12 13 23 18 11 11 11 8 12 13 8 8 8 9 9 10 9 9 10 12 10 10 12 12 10 10 10 16 13 15 11 11 11 11 16 11 10 10 8 8 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 11 11 11 10 11 8 8 7 6 8 8 8 8 8 8 8 8 8 8 10 8 8 10 13 15 12 15 13 11 11 11 11 11 10 8 8 8 10 10 8 8 8 8 8 10 8 10 10 10 11 10 9 10 6 8 8 8 8 8 9 9 9 9 9 8 8 6 6 8 8 9 10 8 8 8 8 10 8 8 8 8 8 8 10 10 10 9 9 10 10 8 15 8 8 6 8 8 8 8 15 19 15 10 8 8 8 8 8 8 8 8 10 8 15 10 11 11 17 11 12 10 8 11 10 10 8 8 11 11 11 11 11 8 8 6 6 6 7 8 8 8 7 6 10 10 10 6 6 8 8 8 9 9 9 9 9 9 8 10 9 9 10 9 8 11 8 8 8 6 8 6 8 9 9 9 9 10 10 10 12 8 10 10 10 8 8 8 9 11 12 10 10 8 8 8 8 8 8 8 8 6 6 8 8 8 10 8 8 8 8 8 8 10 8 13 8 8 8 8 6 6 8 8 11 10 10 10 10 11 8 10 8 8 8 8 11 12 13 15 10 10 10 10 8 9 9 8 8 8 8 8 8 8 9 9 10 14 16 10 10	Open. Hide. 11 11 22 15 23 23 34 34 41 27 27 12 11 11 11 6 6 6 6 6 6 6 6 6 8 21 17 26 16 24 16 32 32 41 44 39 41 34 27 19 10 13 7 7 7 7 9 9 10 13 29 26 28 33 28 28 23 30 30 32 41 41 35 35 39 43 47 47 47 47 47 48 42 48 59 48 48 43 47 41 37 28 37 32 43 43 43 43 42 39 43 43 43 43 43 30 24 9 8 8 8 8 9 9 9 8 8 8 8 8 9 10 10 10 13 10 10 10 10 10 10 10 10 8 8 8 8 8 10 10 8 10 10 8 10 10 10 8 8 8 6 6 6 6 6 6 8 8 8 6 6 8 8 7 7 7 8 7 9 9 9 9 8 8 8 8 8 8 10 10 8 8 6 6 8 8 8 6 6 6 6 8 9 12 12 8 9 8 8 8 8 8 8 8 10 10 9 9 9 9 10 8 8 8 8 8 9 11 12 10 10 10 8 8 8 8 8 8 8 8 8 12 10 10 10 10 8 8 8 8 8 8 9 9 8 8 8 8 8 8 8 8 6 6 6 6 6 8 8 8 8 8 8 8 8 8 8 10 10 9 8 8 8 8 8 8 8 8 8 8 8 8 6 7 8 6 6 8 8 10 10 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 10 10 10 9 12 12 10 8 8 8 8 8 8 8 8 8 8 8 11 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 11 10 8 8 8 8 8 12 22 21 16 16 10 8 8 8 8 8 8 11 11 8 10 8 8 8 8 8 8 8 8 7 10 10 10 10 9 10 10 10 8 8 8 8 8 8 10 10 10 10 10 9 10 10 10 10 10 10 10 9 9 9 9 11 9 8 10 10 8 8 8 8 6 8 8 12 16 12 12 11 15 15 10 8 7 7 8 8 10 10 8 8 8 13 10 9 11 8 8 8 8 8 8 8 8 8 8 10 9 9 9 9 9 9 9 13 10 11 9 7 8 8 13 14 18 10 8 6 6 8 8 9 12 12 12 21 18 13 12 11 15 13 18 11 11 11 10 8 8 8 8 7 8 8 8 8 8 8 8 6 8 7 7 8 8 8 6 6 6 8 8 8 8 8 8 8 10 11 11 11 8 8 6 6 8 8 9 10 15 10 6 6 7 6 8 8 8 9 9 9 10 19 19 12 12 9 9 8 8 8 10 8 8 8 8 8 7 9 9 9 8 8 8 8 8 8 8 8 8 8 10 10 10 10 8 8 8 8 8 6 6 8 8 11 10 8 8 8 8 8 8 11 11 10 10 10 10 11 11 11 17 11 10 8 8 6 6 8 10 8 8 8 8 16 13 13 11 9 9 9 9 8 9 8 8 8 11 10 10 10 11 11 12 9 9 9 9 9 9 11 13 10 10 8 8 7 7 8 8 13 13 11 11 8 8 6 6 10 10 8 6 6 8 8 10 9 9 9 9 8 8 8 6 6 8 8 8 8 6 7 8 8 10 10 10 10 10 8 8 10 9 11 11 11 8 8 8 10 6 6 8 8 8 8 11 13 10 8 8 8 8 8 10 10 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 9 8 8 8 8 8 8 10 11 8 6 7 7 8 8 8 8 11 10 8 8 8 8 10 9 9 10 8 8 6 6 6 7 8 10 8 8 8 8 6 6 8 8 8 6 6 8 7 6 8 8 8 8 8 8 10 12 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 8 8 11 11 11 12 15 15 15 11 9 8 8 6 6 6 8 8 9 10 10 15 15 11 10 9 8 8 8 10 6 6 6 6 8 8 12 10 10 10 11 11 11 11 12 11 8 8 10 10 8 8 8 8 8 8 8 6 6 8 6 6 8 6 8 8 8 10 8 9 9 10 13 9 8 6 6 6 8 8 8 8 6 6 8 8 8 10 8 8 8 8 9 9 9 9 9 10 10 10 9 9

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no099_i10.b1 MSMg01no099_i10.b1 CHROMAT_FILE:
MSMg01no099_i10.b1 PHD_FILE: MSMg01no099_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:03 2005
         (224 letters)



>mm_chr9_71564950_71565573
          Length = 624

 Score =  416 bits (215), Expect = e-121
 Identities = 218/219 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctccctctgaacgcaacagtctattggatcagaagaacaaattgatcctagaagt 65
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gaattctccctctgaaggcaacagtctattggatcagaagaacaaattgatcctagaagt 291

                                                                       
Query: 66  gtctgaactacagcagcaactgcaactggagatgaaggtagctggcttttatattttttc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gtctgaactacagcagcaactgcaactggagatgaaggtagctggcttttatattttttc 231

                                                                       
Query: 126 ccatttctgccttggtagctaaaggtttgttttttgttttgttgttgttgttttgtttgt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 ccatttctgccttggtagctaaaggtttgttttttgttttgttgttgttgttttgtttgt 171

                                                  
Query: 186 ttttggttttttgttttttaaacacattgaggtgtccag 224
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 170 ttttggttttttgttttttaaacacattgaggtgtccag 132


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 624
Length adjustment: 9
Effective length of query: 215
Effective length of database: 615
Effective search space:   132225
Effective search space used:   132225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information