Query= MSMg01no100_n10.b1 MSMg01no100_n10.b1 CHROMAT_FILE:
MSMg01no100_n10.b1 PHD_FILE: MSMg01no100_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:51 2005
(293 letters)
>mm_chr9_34836820_34837512
Length = 693
Score = 528 bits (273), Expect = e-154
Identities = 288/293 (98%)
Strand = Plus / Minus
Query: 1 cttaggcaaggcatgtcaactgccccacaaccccctgctaccacccttataccccctgac 60
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 493 cttaggcaaggcatgtcaactgccccacaaccccctgctgccacccttataccccctgat 434
Query: 61 acccgttccatctcaggatttaacctcccctcagactctgaagcgtcagttttgcaggcc 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 433 acccgttccatctcaggatttaacctcccctcagactctgaaacgtcagttttgcaggcc 374
Query: 121 cccacccacagaacttctgtagagatcgactgttggctggaagggcctcaaagactggtc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cccacccacagaacttctgtagagatcgactgttggctggaagggcctcaaagactggtt 314
Query: 181 gtgtaggccacctagcttctgcagcatgtcctgtggttagagaggttgtcctcatccatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gtgtaggccacctagcttctgcagcatgtcctgtggttagagaggttgtcctcatccatc 254
Query: 241 cctctatctcatctggctaggatctgtcaccccgagtcccttctcactttgag 293
|||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 253 cctctatctcatctggctaggatctgtcaccctgagtcccttctcactttgag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space: 194256
Effective search space used: 194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no100_n10.g1 MSMg01no100_n10.g1 CHROMAT_FILE:
MSMg01no100_n10.g1 PHD_FILE: MSMg01no100_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:51 2005
(245 letters)
>mm_chr9_34709410_34710054
Length = 645
Score = 352 bits (182), Expect = e-101
Identities = 218/244 (89%), Gaps = 23/244 (9%)
Strand = Plus / Plus
Query: 1 ttccaggcagttcttcagttgacagaaggatcccaggcagtgtcagagccgaggtgcaca 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 ttccaggcagttcttcagttgacagaaggatcccaggcagtgtcagaggggaggtgcaca 260
Query: 61 gtcctgccagagaagaagggtaagaggagccaagaatggtcccagagaaccagcccttag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcctgccagagaagaagggtaagaggagccaagaatggtcccagagaaccagcccttag 320
Query: 121 ggccgagatccagactcagcagggaactgggtcttgcagagaagagactggagtgctata 180
|||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 ggccgagatccagactcagcagggaactgg---------------------agtgctata 359
Query: 181 caccatgctcatagtggggtcagccagacaacaccatgccaagactctctgtttagcagc 240
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 360 caccatgctcagagtggggtcagccagacaacaccatgccaagactct--gtttagcagc 417
Query: 241 agca 244
||||
Sbjct: 418 agca 421
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
