BAC Information

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BAC

Clone NameMSMg01-100N20
Chromosome9 (Build37)
Map Location 25,487,165 - 25,487,402
singlet/doubletsinglet
Overlap genenone
Upstream geneTbx20, LOC666251, LOC100040960, Herpud2, LOC666297, 9130004C02Rik, Sept7, EG666327, 2310005P05Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100N20.T7 (MSMg01no100_n20.b1)MSMg01-100N20.TJ (MSMg01no100_n20.g1)
ACCAG316443AG316444
length1,031776
length of high quality
(start - end)
---260 (131 - 390)
definitionCHROMAT_FILE: MSMg01no100_n20.b1 PHD_FILE: MSMg01no100_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:53 2005CHROMAT_FILE: MSMg01no100_n20.g1 PHD_FILE: MSMg01no100_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNCCCCNNNNCCCCNNNNCCCCCCCCCCNNCCCCTNNCCCCCCT
CTCCNNCCNATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCAGGAATTCTCCATTTTCAAAAAAAAAAAAGACCTATANG
AGTGTTCCTTGTCCATGGTCCTCAGGGAGCTACTAGAAGCCTCGCTGCTA
TTTGTTAGCTCTGCAGCTACCCTAGATTGCCAGCTGCGCCTCTAGGCTTT
CTCTCTAGATCGCGGTGGGTACTCAGTTCTTCACCTACGTGGCAGAGTTG
AACTCATGCACCAGCCTTCTACCTACGTCCTCTCTACATGACTCTCTCTG
CTGGCCAGCTGCTCACCTCTTTGCTAACAAAATTACATGTGCTTCTATCA
GCTACATATGTCCTCTCCTTATAGTGGCTATTATTCTTATTTTTGTGCTG
TATCTCCTACCATGCCCTTCCTAATGACATTGCTTTGTTGCTTCACACCC
CCCGGCACATCTGTATATTTCTTATTCATGNAATTCATCACTCCTCTTGC
TTAGCCTACTCTCCCACCATTTTTGTAGTTTTCCCCCTGTCCTCTCTCCT
TCTATATTTGTGTTGTCATCACGTGTAATATAGCGAACGCGACCAGCCCC
TACCAACCACCAAGTCCTCACCCCTAGCCCTTGGCTCATCCCCGTATATT
CTCCCTTTAATCGATTATAACTAGTATATATGTCTTATCTTCCTATCTCT
TCTTTGTACATAACCCGCCTCTTCCATTGATATTACCTCCTGTAATCTTT
TTTCCTCCTATACCGTCGTCACCCACACCGCTTACCTATTCGCCCCATAT
CTCCTAATTATATCTCTCTGATCATCTCCTTCTAGTATTCATATCCCACC
TCATCTTTATCTCATTCTCCATATTCTCACCCCACCGATGTANAATAATA
ATACCATCCCACATCACATCTCTCTACAATCATACATATCACCACCACAC
ATATTATCCTACTACACACAACTATTACACT
NNNNNNNNNNNNNNNNCCCAAATTCCNTNCCCCCCTTNNCCCCTGGTCTN
NTTTTCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTGACTCAGAAGGAATTCAGCTGTTCCATGGATGCTGAG
GAGGTGGGGTGCATCAGCTCTACCCGGTGAATACTCTACCACTGCCATCT
ACTGCTTGGGTGTTGGAGAACAATGGTGTTCTTGCTCAACCCCTAAAACC
CTATTTGTGTTTTGGGATTAGTTATAGAACAAAGCTCTGGACATTTGTGA
ATTTAAAAATATGTATCAGGAATCTGACCTACTATCTTGAGTCCAGGGCT
CTATAATCTTCTCCCTCCTTTTTTTCTGTCCTTCTGTTAACAAATCACAG
TGTCGGAAAGTTTATTCCCGCCCCCCCCCGCCAGTGATTGGACCACTAGC
ACCTGTTGTGCCTCTCCCCACCAGATGCGGCAGCAAGGAGTCATCACTGA
ACACTGTAAGTCATTTTACCGGTTACTCACCATTCTGTGCCCGATGCATT
AACCAGCTTGTGTTCCCTTAGAATTTTTCCTATGGTATGGCTCGAAATGT
ATATGGATTTCCGGCTCGTCGTATGTCCGATATTTTTCTTCCTTGCTCCT
TTCTTTGACCCCATCCACTCTCATACCCCCGGATTCCCTGATTCTAGTTC
CTCTATATGCCCTAGCTGTTTCCGTTTTCTGGACTCATTAGCGCTGGCTC
CACCACTGTTTATCCATTGCAATTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_n20.g1 MSMg01no100_n20.g1 CHROMAT_FILE:
MSMg01no100_n20.g1 PHD_FILE: MSMg01no100_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:53 2005
         (260 letters)



>mm_chr9_25486965_25487624
          Length = 660

 Score =  398 bits (206), Expect = e-115
 Identities = 230/238 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctgttccatggatgctgaggaggtggggtgcatcagctctacccggtgaatactctacc 60
           ||||||||||||||||| || |||||||||||||||||||||   |||||||||||||||
Sbjct: 438 gctgttccatggatgcttagcaggtggggtgcatcagctctaaagggtgaatactctacc 379

                                                                       
Query: 61  actgccatctactgcttgggtgttggagaacaatggtgttcttgctcaacccctaaaacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 actgccatctactgcttgggtgttggagaacaatggtgttcttgctcaacccctaaaacc 319

                                                                       
Query: 121 ctatttgtgttttgggattagttatagaacaaagctctggacatttgtgaatttaaaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ctatttgtgttttgggattagttatagaacaaagctctggacatttgtgaatttaaaaat 259

                                                                     
Query: 181 atgtatcaggaatctgacctactatcttgagtccagggctctataatcttctccctcc 238
           ||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 258 atgtagcaggaatctgacctattatcttgagtccagggctctatagtcttctccctcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 660
Length adjustment: 9
Effective length of query: 251
Effective length of database: 651
Effective search space:   163401
Effective search space used:   163401
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)