Query= MSMg01no101_f03.b1 MSMg01no101_f03.b1 CHROMAT_FILE:
MSMg01no101_f03.b1 PHD_FILE: MSMg01no101_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:29 2005
(223 letters)
>mm_chr9_72453820_72454438
Length = 619
Score = 389 bits (201), Expect = e-113
Identities = 216/223 (96%), Gaps = 4/223 (1%)
Strand = Plus / Minus
Query: 1 cacactggagtctttgttcaagaacataagggattttatacaagaaaaataaagtgaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 cacactggagtctttgttcaagaacataagggattttatacaagaaaaataaagtgaaaa 360
Query: 61 aagcccattaaaacaaaacaaaacaaacaaaaaacccccaaaactccaaaacatggacta 120
|||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||
Sbjct: 359 aagcccattaaaacaaaaca----aaacaaaaaacccccagaactccaaaacatgggcta 304
Query: 121 tgaactaagagaccttagagatcatctgcactaacatttgtactccagtggtaaggctaa 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 303 tgaactaagagaccttagagatcatctgcactaacatttatactccagtggtaaggctaa 244
Query: 181 caccaagggcaatgagacgtccagagtcactctttccctttgt 223
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 caccaagggcaatgagacgtccagagtcactctttccctttgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 619
Length adjustment: 9
Effective length of query: 214
Effective length of database: 610
Effective search space: 130540
Effective search space used: 130540
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no101_f03.g1 MSMg01no101_f03.g1 CHROMAT_FILE:
MSMg01no101_f03.g1 PHD_FILE: MSMg01no101_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:29 2005
(475 letters)
>mm_chr9_72306245_72307119
Length = 875
Score = 895 bits (463), Expect = 0.0
Identities = 472/475 (99%)
Strand = Plus / Plus
Query: 1 cacagaaccagaggccaaacacagcagctcactacagggagacgacagacctctctgggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacagaaccagaggccaaacacagcagctcactacagggagacgacagacctctctgggc 260
Query: 61 agtatgtaagacacttttctaattcataaacattaaatagctatttacttctctcaagtt 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 agtatgtaagacacttttctaattcataaacattaaacagctatttacttctctcaagtt 320
Query: 121 tctgtcatcaatattttgtagttttcaatatagccatcttcaatctccttggtaaaattt 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 tctgtcatcaatattttgtagttttcaatacagccatcttcaatctccttggtaaaattt 380
Query: 181 agtctaaaatgtttttgttagatactacaaatggggtactatagattttctctgatattc 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 agtctaaaatgtttttgttagatactacaaatggggtactgtagattttctctgatattc 440
Query: 241 tgccactgatgtataaaaatgccactactttggcttgtgctatgctagggactggatctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgccactgatgtataaaaatgccactactttggcttgtgctatgctagggactggatctg 500
Query: 301 gggtctcatacatgttctgtaagtgctctgccactgagctacagctcaaggctttcattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggtctcatacatgttctgtaagtgctctgccactgagctacagctcaaggctttcattt 560
Query: 361 gtgctgtcagtctcctgatgtgtgcctattggttttcttaccttgtaactttactcagtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgctgtcagtctcctgatgtgtgcctattggttttcttaccttgtaactttactcagtt 620
Query: 421 gatttgatctcaaccatttttcataatggacaacccaacttctttgttcccagac 475
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gatttgatctcaaccatttttcataatggacaacccaacttctttgttcccagac 675
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
