BAC Information

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BAC

Clone NameMSMg01-101H19
Chromosome9 (Build37)
Map Location 28,684,303 - 28,684,573
singlet/doubletsinglet
Overlap geneOpcml
Upstream genenone
Downstream geneHnt, LOC625222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101H19.T7 (MSMg01no101_h19.b1)MSMg01-101H19.TJ (MSMg01no101_h19.g1)
ACCAG316888AG316889
length689752
length of high quality
(start - end)
---251 (74 - 324)
definitionCHROMAT_FILE: MSMg01no101_h19.b1 PHD_FILE: MSMg01no101_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:43 2005CHROMAT_FILE: MSMg01no101_h19.g1 PHD_FILE: MSMg01no101_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCGTACAGAGGCGNGGAAGACGAAGTTTGCAAAACAGAGGGAAAGACG
ATGTCTGAGTGCGAGAACGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXGATGCGGAGAGCTTTTTTTTTTTATCGAGCGCCC
AATGCTGTGGAGAACCACGAATTTTCCCCCCCCCTCACCAGGTGTTXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTTTAGAA
CGACTGAACCATCGGAACCGAGGACCCTTAACGAAATGCACATCGATGXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXGTAACTACTTGTGCAGAGCAACGAAACTTACGATAACC
GCGGAACCGGATTGACACTGTTAGCGTGTATACTAATGGATATCTTGAGC
CCCATACTAATAACCTCACCAACTATAACAGTGGGAACC
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCATAGGCTGAGTTCTGTAGCAATAATTGA
AATGTTACAGATGGCTTTGGGGTCTTATTTAGATATTTACTTGTGTGGCT
TCTTTCAGATGATGGAATAACAAAGATTTCAGTAATTAATTGAAAGTGCA
TGAATTCATGTAGGGTTGCCTATATCACTTTATAGTTGGTAAGCAGGGTA
AGTGAGATAAGGGGATACCAAAAGAATCACAGGAAGACAAAGCATGATTC
AGGTTGAGATACTATGAAACAAATGTTTTTATTTTGAAAATTTACAGCTG
TAAGTACCCTAATGTGCCCTGAGCCCCTGGCAGCTTCAGGACTAGAGAGG
TCACCATGAAGATCAATGCCGGATTGAAGAGATGACACTCCCCATCCCTT
AACACTTACCACATCCAGTAAGGCGAGAGGTCTTTTGTTTTAATCTGAAC
ACTAATGTCCAGGGATATAATTGGTTTTGCCATTTAAATGAAGATAGTTA
TAACACTTCACACCGAATTGTAGTTGCGAGTTCCTTAGTAGCTGATCATG
TGCTAGATCCTTCTGTTACCGTTCAACATTGTACTTTCACAATCACTTGG
ATCATCTCCCTCTATACTCATACTCTATGGATCTTCTCTCCTCTCACGTT
CTTTCCTTTTCACCTCTTACCATACTGCTTACCCCTGTCCCCTTTTGCCC
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_h19.g1 MSMg01no101_h19.g1 CHROMAT_FILE:
MSMg01no101_h19.g1 PHD_FILE: MSMg01no101_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:43 2005
         (251 letters)



>mm_chr9_28684187_28684837
          Length = 651

 Score =  435 bits (225), Expect = e-126
 Identities = 250/271 (92%), Gaps = 20/271 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   taggctgagttctgtagcaataattgaaatgttacagatggctttggggtcttatttaga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 387 taggctgagttctgtagcaataattgaaatgttacagatggctttggggttttatttaga 328

                                                                       
Query: 61  tatttacttgtgtggcttctttcagatgatggaataacaaagatttcagtaattaattga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tatttacttgtgtggcttctttcagatgatggaataacaaagatttcagtaattaattga 268

                                                                       
Query: 121 aagtgcatgaattcatgtagggttgcctatatcactttatagttggtaagcagggtaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aagtgcatgaattcatgtagggttgcctatatcactttatagttggtaagcagggtaagt 208

                                                                       
Query: 181 gagataa--------------------ggggataccaaaagaatcacaggaagacaaagc 220
           |||||||                    |||||||||||||||||||||||||||||||||
Sbjct: 207 gagataaatgaggtaccagaggaaagtggggataccaaaagaatcacaggaagacaaagc 148

                                          
Query: 221 atgattcaggttgagatactatgaaacaaat 251
           |||||||||||||||||||||||||||||||
Sbjct: 147 atgattcaggttgagatactatgaaacaaat 117


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)