Query= MSMg01no101_l16.b1 MSMg01no101_l16.b1 CHROMAT_FILE:
MSMg01no101_l16.b1 PHD_FILE: MSMg01no101_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:03 2005
(553 letters)
>mm_chr9_59158348_59159299
Length = 952
Score = 1031 bits (533), Expect = 0.0
Identities = 548/553 (99%), Gaps = 1/553 (0%)
Strand = Plus / Plus
Query: 1 gcagcccttccaggctgctggcgattgatggcagacctctggcagactttcaccaggagc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 gcagcccttccaggctgctggcgattgatggcagacctctggcagactttcag-aggagc 259
Query: 61 gcttgcttttttcctggaggtgaaatgtagcattatgtatgcttgttcctcttacataat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gcttgcttttttcctggaggtgaaatgtagcattatgtatgcttgttcctcttacataat 319
Query: 121 attccagtggtagtgaggccaaagtaacccatcccagtggattttatgttataagaatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 attccagtggtagtgaggccaaagtaacccatcccagtggattttatgttataagaatct 379
Query: 181 gtctgagtcctggacaaatgtttaatacctgtgtttcacatcatttgtgttaaaggactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtctgagtcctggacaaatgtttaatacctgtgtttcacatcatttgtgttaaaggactg 439
Query: 241 ggcatccacccattattgggtgtcctttggcagtacttagtgctctttagtgaatcactt 300
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggcatccacccagcagtgggtgtcctttggcagtacttagtgctctttagtgaatcactt 499
Query: 301 ccaagtcagacagtgactctcacctagagtaattaactgttacgtgaggaacaatatatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ccaagtcagacagtgactctcacctagagtaattaactgttacgtgaggaacaatatatg 559
Query: 361 cttcttgaaaagtacccctatctccaagaacgcagaaggaattagttgtttccagattct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cttcttgaaaagtacccctatctccaagaacgcagaaggaattagttgtttccagattct 619
Query: 421 ctctgattcacactagaaccatctggggattgtagagggcagatctaaaattagaagcag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctctgattcacactagaaccatctggggattgtagagggcagatctaaaattagaagcag 679
Query: 481 aatgttttagtaagaatggacatttaataatatccaggctttgagttgctgagttcagtt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aatgttttagtaagaatggacatttaataatatccaggctttgagttgctgagttcagtt 739
Query: 541 tcccaaataggaa 553
|||||||||||||
Sbjct: 740 tcccaaataggaa 752
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 952
Length adjustment: 10
Effective length of query: 543
Effective length of database: 942
Effective search space: 511506
Effective search space used: 511506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no101_l16.g1 MSMg01no101_l16.g1 CHROMAT_FILE:
MSMg01no101_l16.g1 PHD_FILE: MSMg01no101_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:03 2005
(212 letters)
>mm_chr9_59308744_59309355
Length = 612
Score = 360 bits (186), Expect = e-104
Identities = 210/228 (92%), Gaps = 16/228 (7%)
Strand = Plus / Minus
Query: 1 atagtaattgtgccaagttaaaaagattaaaaacacagaaatgtagcctgtaataattac 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 atagtaattgtgctaagttaaaaagattaaaaacacagaaatgtagcctgtaataattac 295
Query: 61 ccagatatttacccttgctgctgttttctgtagttccatgtttcttccttgtattatttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ccagatatttacccttgctgctgttttctgtagttccatgtttcttccttgtattatttg 235
Query: 121 acttagtttcagatggtcactcttcttaagactctgtgtgtgtgtgtgtgtgtgtgt--- 177
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 acttagtttcagatggtcactcttcttaagactctgtgtgtgtgtgtgtgtgtgtgtgtg 175
Query: 178 -------------ttgggggaggtaagtctgaatgtggtaatgtgtga 212
|||||||||||||||||||| ||||||||||||||
Sbjct: 174 tgtgtgtgtgtgtttgggggaggtaagtctgaaggtggtaatgtgtga 127
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 612
Length adjustment: 9
Effective length of query: 203
Effective length of database: 603
Effective search space: 122409
Effective search space used: 122409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
