BAC Information

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BAC

Clone NameMSMg01-101P17
Chromosome9 (Build37)
Map Location 73,184,450 - 73,184,759
singlet/doubletsinglet
Overlap genenone
Upstream geneSuhw4, LOC100041760, Mns1, LOC666007, Tex9, 4930509E16Rik, Rfxdc2, Nedd4, EG639396, Prtg, LOC100040694, Pygo1, Dyx1c1, EG546143, Ccpg1, LOC100041896, Pigb, Rab27a, 2410004A20Rik, BC003885, EG436081
Downstream geneUnc13c, Wdr72
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101P17.T7 (MSMg01no101_p17.b1)MSMg01-101P17.TJ (MSMg01no101_p17.g1)
ACCAG317250AG317251
length786748
length of high quality
(start - end)
418 (105 - 522)470 (61 - 530)
definitionCHROMAT_FILE: MSMg01no101_p17.b1 PHD_FILE: MSMg01no101_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:25 2005CHROMAT_FILE: MSMg01no101_p17.g1 PHD_FILE: MSMg01no101_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNTTTTNNNNNNNNNNNNTTTTNNNTTCCCCCCCCTNCCCTCCTATA
TACNAAAACTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTATCTGTACTCTACCTACATATAAGGTAAACAGAAA
GCATGCCATGAGACACATACAGGTTACAGCGAAGTCTAATGTTGATAAGC
CCAATATTTAAAACTTTATTTTATCTTATGTACATGGCTGTTTGCCTACA
TGTATGTAGGTGTACCACATGACTTCAGAGGCCAGAAGAGGGTGTTGGAT
CCCCTAGAACTGGAGTTTCAGTTGGTTGTAAGCCACCATATGAGTGCAGG
GAATTGAACCTAGATCCTATGCAAGGACAGACCGTGCTCTTGACTGGTTA
GCCATCTCTCCAGTGCCCTAATATTTACAACTTTTTAAAAATTGCTTAAA
AAACTTAAGACATCCAGCTGAGTGAAACCAAAAGGAAGTATTACAGCAGA
TAGCATGAAAATATATAAAGAAGTTCATAAGATGCTAAAATGAATAATTT
GCCAACAAATTGGATAACCTACAAGAAATTGACAAATTCCTACATACATA
CAACCTATAAAAATTGAGTAATGAAAATTTTTTTAAATGACCAGCCCATA
ATGAGCAAAGATTTGAAACTATAATTATAAAAAAAAAGTTTCCCATCAAA
GATGAGAGCCAACTGCTTTATTGCTGAGTTATACCAACTCTTTAAAGCAG
ATTAATTAACATTCCTGTTCACTCCCGCAAAATAAT
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTCCCCATTCACCGAGAGACTGCAAAGGCAGGAAGGCAATT
CAGTCCTAGACAGCCAAGCAGATACAATGCAGTCGGAACAGTCTCTTAAG
ACAAACATCTGCTTCTCAAGTAAGAGGACTGGACGGTAGCCCTGACACCC
ATGGTTCATTTCCATCCTTCGCCAGGAAGGAGGAGTGGCCATCTGCCTTG
GGTACTTAGCTTTAGACACAGAACAGACAAACGGTTATTTTTGATAACAA
GAAGTAGTTTTGCAATTTAGAGCAAGTAGCCCCTTGAGTTAGGGTCCTGC
TTCCAACAGAAGGCAAGACAAGGGCACCATCTTTCTTGATGTCTAATTCA
AGATGATATCTCCCAGACTCTTGAGAAAACATTCATAAAATATACACAAG
GCCAACAGGCAAAAGGCCAACTTGGTCTTCTAAAGTGTGAGTATGTGTGT
GTGCACATAGATATGTATATATAAGTATAAATATATTTATATATAAATAA
GTATAAATACATAAGTATATGCACATATATATGTATATATGTGCATATAT
ATATACATACCCCCACTATATATATATTGTGTATATATATATTTAAAAGC
CTTCTAACGTAAGTTTTTTTTCTAAGCTTTTCCCTCTGTTCCCTTCCCTT
TCTTCCCTTTGAGATAGTCTCTTGTTTCTAAGCTGGCCTTAAATTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_p17.b1 MSMg01no101_p17.b1 CHROMAT_FILE:
MSMg01no101_p17.b1 PHD_FILE: MSMg01no101_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:25 2005
         (418 letters)



>mm_chr9_73184450_73185267
          Length = 818

 Score =  592 bits (306), Expect = e-173
 Identities = 309/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctatctgtactctacctacatataaggtaaacagaaagcatgccatgagacacat 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gaattctatctgtattctacctacatataaggtaaacagaaagcatgccatgagacacat 251

                                                                       
Query: 65  acaggttacagcgaagtctaatgttgataagcccaatatttaaaactttattttatctta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 acaggttacagcgaagtctaatgttgataagcccaatatttaaaactttattttatctta 191

                                                                       
Query: 125 tgtacatggctgtttgcctacatgtatgtaggtgtaccacatgacttcagaggccagaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tgtacatggctgtttgcctacatgtatgtaggtgtaccacatgacttcagaggccagaag 131

                                                                       
Query: 185 agggtgttggatcccctagaactggagtttcagttggttgtaagccaccatatgagtgca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 agggtgttggatcccctagaactggagtttcagttggttgtaagccaccatatgagtgca 71

                                                                       
Query: 245 gggaattgaacctagatcctatgcaaggacagaccgtgctcttgactggttagccatctc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  gggaattgaacctagatcctatgcaaggacagaccgtgctcttgactggttagccatctc 11

                     
Query: 305 tccagtgccc 314
           ||||||||||
Sbjct: 10  tccagtgccc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)