BAC Information

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BAC

Clone NameMSMg01-102J16
Chromosome9 (Build37)
Map Location 92,880,433 - 92,880,698
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850, Plscr4, Plod2, LOC100039921, LOC100039931, LOC100039944, LOC667009
Downstream geneLOC100040114, LOC674371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102J16.T7 (MSMg01no102_j16.b1)MSMg01-102J16.TJ (MSMg01no102_j16.g1)
ACCAG317702AG317703
length767716
length of high quality
(start - end)
269 (101 - 369)246 (75 - 320)
definitionCHROMAT_FILE: MSMg01no102_j16.b1 PHD_FILE: MSMg01no102_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:15 2005CHROMAT_FILE: MSMg01no102_j16.g1 PHD_FILE: MSMg01no102_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNGGGGNNNNNNNNNNNNCCCCCCCCCCNNNNCCCTTTTAAT
TNNNAACTCTATXXXXXXXXXXXXXXXXXXXXXXCTATTCCGGAGAGGTC
CGCGGAATTCATAGTTTTCTGACTGGAAAAATATTCAGGATGTGACATAT
ATCCTGCTTACTTAGATGGTCATTCTGTGTTGTAAATGCTCTCCAGACTG
GGTGTCTCCATCAGTAAATAAGGAGAACATGGAGCTACTGGGTAGAGCTC
AAACTCTAAGCATTATAATCCCTCTAGCATCCATGGGAAGGGAGGACCAG
CTGTGTAGCTGCTGTATCTCTCCATTTTCTGCCCTCTCTCCCACCTCATG
GGCTTCTCTTCATGCTTGACTATTTCTCGTCTGCCACCATCATCCAGAAT
GTACATTATAAGCTTGTTAGTGCCCACCCCTAACAAGTATACATTGCATG
TACATTGCATGCTTTACATTACAAATCTGTGAGGAAGAGGGATAAATAAT
AGAAATAATACTTTGTGTATTACTCTGTATAATTTTATGTATTACAGAAA
AATCTTATAAAACTAAGCTAAGGCTTAAAAAGTATTGTATAATAGTTTTT
AAAATCCTGCCCGATATATATTTAAAAGACCCTAATTGCCAAATATTACC
CTGTCCAATTTTTTGAATAAAGTTAAAGGCATACTAACGACTCTTTAATT
CCTTGAATAAAGCTCCCTAATAAAAAATAATTCTTTTAATTGATATTGGT
TTATTTTATTGTGTTGA
ACGATGAAGTGGGAGGCCTGGCGGCCGCCTGGTTCCATAATTGAGGTGAA
CTATAGAATGTTTCGAGAAATTCTCAGCTCCTCTAGTGTCATGCCTGCCT
GGATGTTGCCATGCTTCAGGCCATGATGATTGTGGGCCTGGGTACCCGAG
GTTTTCCATGGAGATCTCTGTCCAGGCCTGGTGCAAGGGTTCCAGTGAAG
GGAAGTAAGTGCAGGCAGGGAGGCGAAATCTCTGCCCTGCCTTCTAGGTC
AGTAACTCCAAGCCGCTTTGAGCTGAGTTGGGTCGGACTGGGAAGCCTAC
TATCCAGTGAGGAGTGTGTTTATTCCTCAGGTGTCTCTTCAGGAAAGAAG
ATCTCTTCCCAAGTGTTACCTACCGCCCCTGGAACAAAAGACTCAGACGA
AGGAGTAGTCCTCCTGTACCTTTAGTTCCCTGGATGGATTTATATACAGT
TCTGGGGGTGACTCAGGGTTTGACAGCAGGTACCTTTCATTGGCTTGGAC
TGATAGTTTGAGCATAACCTAATTTGCATGTGGCAAGGTTTGGTGTTGTT
CCTATGTGACTGATAGCCATGCACCTCTCCTGTAAGGGCTGTGGGGACAG
TACCTTCATTAGGACCCAGGGGTCCAGTACACATGATATCAATGCCCCCA
GTCCCATGTATGTGGAAATTCCCCCCACTGGGCCCCTCCAGAGTTTCAGA
CCTTATCCTCACTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_j16.b1 MSMg01no102_j16.b1 CHROMAT_FILE:
MSMg01no102_j16.b1 PHD_FILE: MSMg01no102_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:15 2005
         (269 letters)



>mm_chr9_92880229_92880898
          Length = 670

 Score =  468 bits (242), Expect = e-136
 Identities = 260/266 (97%), Gaps = 1/266 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatagttttc-tgactggaaaaatattcaggatgtgacatatatcctgcttactt 63
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatagtttacatgactggaaaaatattcaggatgtgacatatatcctgcttactt 264

                                                                       
Query: 64  agatggtcattctgtgttgtaaatgctctccagactgggtgtctccatcagtaaataagg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agatggtcattctgtgttgtaaatgctctccagactgggtgtctccatcagtaaataagg 324

                                                                       
Query: 124 agaacatggagctactgggtagagctcaaactctaagcattataatccctctagcatcca 183
           ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 325 agaacatggagctactgggcagagctcaaactctaagcattataatccatctagcatcca 384

                                                                       
Query: 184 tgggaagggaggaccagctgtgtagctgctgtatctctccattttctgccctctctccca 243
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgggaagggaggactggctgtgtagctgctgtatctctccattttctgccctctctccca 444

                                     
Query: 244 cctcatgggcttctcttcatgcttga 269
           ||||||||||||||||||||||||||
Sbjct: 445 cctcatgggcttctcttcatgcttga 470


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 670
Length adjustment: 9
Effective length of query: 260
Effective length of database: 661
Effective search space:   171860
Effective search space used:   171860
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)