BAC Information

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BAC

Clone NameMSMg01-102K12
Chromosome9 (Build37)
Map Location 80,063,415 - 80,063,516
singlet/doubletsinglet
Overlap geneMyo6
Upstream geneLOC436085, LOC235509, LOC666479, Col12a1, Cox7a2, Tmem30a, Filip1, LOC100041218, LOC666490, Senp6, LOC100041249
Downstream geneImpg1, EG666534
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102K12.T7 (MSMg01no102_k12.b1)MSMg01-102K12.TJ (MSMg01no102_k12.g1)
ACCAG317741AG317742
length890706
length of high quality
(start - end)
---102 (70 - 171)
definitionCHROMAT_FILE: MSMg01no102_k12.b1 PHD_FILE: MSMg01no102_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:19 2005CHROMAT_FILE: MSMg01no102_k12.g1 PHD_FILE: MSMg01no102_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAGAGAGGCGNGGAA
TTCAATAATCTTTCCAGATAGCAGACGCAAGAATAGTTTCGTCATCTGAA
GCCAATTGCTTGGAGATGTTACTGATACCCAACATATCTATCGCAGAGAT
ACTTACTGTTATGAGATTGACGACCAAGATGACCCACTCGCCCTATCACG
TCAAGACATCATCGGGCATATCCTCTTGATCGACATTTGTCAGAAATACC
TCGATATTCGCAACTGACCTACAATATGCATTGATTATACAACACGGACT
CATCATGCATACTCATCAATCGCACAACCTGAATAAATCACTTAGAGAGC
TCCTCTATACCATCTCACAAGTATTTTTTGTATTACACGACTGAAACGCA
TCCACTACTTAAGTAATGAACTATCGTCTCTATCATACGCTCGATGTATC
GGAAGACTATCTACGGAAATTCCTACACATCTAAGTAGGCAGGACTGAAA
TATTCTGTTATCTTATCATCTGCTAGAACGACCGACTTCTCTGGCAACAC
AATATTCATTCCGGTTCAATCATACGCGAATACATCATTACAACTCGATG
CGACTTGTCACTACGCTGATAGCATTGAATTTATGCATTGACGCCTTGAA
TATCGTCACGTTATTTGCACATTATGTCCATGGACCTGCAATCTTGTACT
TCCACAAAAAATAGTAGGGCCTGTTGATGCGACTTATTACCCATCCGAAT
TTGCGCTTGCGTATTCTTATTTGATGATTCGACGCGTCTCCCACACAACC
TAACTGCTCCATTCGTACCACGTTGTCTCCATATGCATCTACCCCCTATA
TCCTTCTCCCGTAAATTCTCTGTATCGTTCACCATGCCCN
AAAGTGATAGGCCTGGCGACCGCCTGGCACAAAAATGAGGGGTGACCTAT
AGAATTTTTCGCGAAATTCAACTCTTTCTAGTCTCCTGTCTCCTCTTACT
CTCCTGGATGGTGTGACCACTTCATTCATGCACCAGTGACTGTCAAGTTG
TGTATATCATGCTGGGCCTTAGGAGCAAGCAGTCAATGGTCTGTGCCCTG
ATGGAATTACAGTGTCTCAATGAGATGGGTGCTTCAGCAGGATTATTCTT
GACCTCAGGAATTCAAGAGCATAACCAGGTATACCGGTACACTGTACAAT
CCTTGGTAAAAGTTTTTCTGTTTTGCTCAATAGTGCGTGGATCTGATATG
CCTGTGATATCCACGTCCGCCATACTCAAGGTTGACAAGAGTTTGCATCG
TGCCTTAACATCTGAAGATGATTATCTTTGCCATCTCGCTGTTTCTGACT
TTACTATTTCGTGCAACACCACTTATCGCTCATACCACACTAATCGCTCA
TTACTTGTTACGCGTCCAGCTTTGCCTGTATCCCTTACCCTTTTCTACTT
CTGCAATTCTTATTTCCATTGTCATAAACTGTTTCTCATAAACCTCTATA
ATCGATATTTTATGCCCCCTTCCTCCCCCTCCATATTTTCGCATCTACCT
CTTTTCCTCTCCTACCTCCCTTTATCGTTATTTACCCCCCCCTTCTCGCT
CTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_k12.g1 MSMg01no102_k12.g1 CHROMAT_FILE:
MSMg01no102_k12.g1 PHD_FILE: MSMg01no102_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:19 2005
         (102 letters)



>mm_chr9_80063215_80063716
          Length = 502

 Score =  166 bits (86), Expect = 2e-46
 Identities = 98/102 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactctttctagtctcctgtctcctcttactctcctggatggtgtgaccacttcattcat 60
           ||||||||||||||||| ||||||||||||||||||||||||| ||| || |||||||||
Sbjct: 201 aactctttctagtctcccgtctcctcttactctcctggatggtatgagcagttcattcat 260

                                                     
Query: 61  gcaccagtgactgtcaagttgtgtatatcatgctgggcctta 102
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaccagtgactgtcaagttgtgtatatcatgctgggcctta 302


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 102
Length of database: 502
Length adjustment: 8
Effective length of query: 94
Effective length of database: 494
Effective search space:    46436
Effective search space used:    46436
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)