BAC Information

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BAC

Clone NameMSMg01-103E12
Chromosome9 (Build37)
Map Location 59,594,528 - 59,594,857
singlet/doubletsinglet
Overlap geneSenp8
Upstream geneHcn4, Neo1, LOC100040186, EG665330, Adpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2
Downstream geneMyo9a, EG665385, LOC100040361, Nr2e3, EG665389, Thsd4, LOC100039792, EG384942, Lrrc49, Larp6, LOC100040447
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103E12.T7 (MSMg01no103_e12.b1)MSMg01-103E12.TJ (MSMg01no103_e12.g1)
ACCAG318191AG318192
length714764
length of high quality
(start - end)
76 (115 - 190)342 (79 - 420)
definitionCHROMAT_FILE: MSMg01no103_e12.b1 PHD_FILE: MSMg01no103_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:09 2005CHROMAT_FILE: MSMg01no103_e12.g1 PHD_FILE: MSMg01no103_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAGAATTTGCGGCGCTAAACGACTCCCTTCGAACCNGATGCGCGGAANCA
CAATTTCTGTAGCAAGAGCGGAAAAGCGCATCTCAGCGACCCTNNAACAC
CACCACAACACCCGCAACTCCTTTCTCATTTTATAGCCTATAACTCACTA
TCTCAACTCACCAGTATAACCTTTACTTTAGTTCAACTCCTTACGAGTTT
TAGAGAAATCCTCTGTAAATTTACAAAGAGGTAATTACTTCTATTTTTTA
ACTCACAGAACAATTTATACAACATCACTAGAAATAAATATGACATATGC
TATGTATTTTTTTTTTATACCAACCAAGCCGCCAGGCNAACAAACCATTT
TTTTTCCCCCCCCACCGCCCAGGAAACTGATATACGCTGGCTCACACAAC
TTCCCTCTAAAAGAAGAAACAAAAAATGCTTAGGTAACTAAGTACCATGT
TCTACCTCAGCTGGCTACCGTGACCCTCGCTTACTACTCCTAGCCTCTCA
GGATTACACCTACCACTATGATTTCCCCGACCCCATCTGCCACTCATACC
ATTTCGAGCCTAATTACACGACACTGTTTCTTTATCACACCAGCGCATTT
AACCTCTATGTATCCCTGCCCCCCACCATCCTACCAAAGTAATTTTCTTT
CTTTTTTAACAACCCCCGTTTAAGCCTCCCGCCCCTCCCTTTTTTCAGTT
ACCCTCTTCTTGCA
NCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTATACAG
AGAAACCCTGTCTCGAAAAACAAAAACAAAAACAAAAACAAAAAAAAAAC
CAAAAAAAAAAAAAACCCCCCCAAAAAAAAAGAGAAACAGGTATCCTGAT
TTCAAGTCCAACATTTATACACACAAGTATAGATGCAATCTGATCAGGAA
ACTGTTATTAATATCTTTGAGCACATGATTAGGTATTTTGCTTTACATAA
GAACTAAAAATACTAAAGACCTAGTAATTCTAAAGGCTGGGCTTTTAGAA
TTACCTCTTGGTCACATAAGATCCCAGTTGATGCATACTGGGGATGGATG
TGCTTTTTTTTTGTTGTTGCCGCTGGTATTTTGTTTACTTTTCTCTCCCA
CTCTATAATCATTTATCCTATCCTTACTTTATATCTCTAATCTCCTTTCC
CCCCCTATCTATAACTTCTTTATTTACTCACCCCAACTTCACCTATTTTT
ATTTACACAACGCATACATTCCTCCCTTTCCCTCACACCTTTACCTCTAT
TCCTCCTCCCCTCCATTATTATTTTACTATCCTATCCCACCACCCCATTA
ATCATTACTTTACCTCGCATTACACCCCCATTATTCCCCCACTTTTCACA
TATCCTTTTATCCTCATTCCCCACCCTATTCCCCCTCACACACTACTCAC
CACACTATATCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_e12.g1 MSMg01no103_e12.g1 CHROMAT_FILE:
MSMg01no103_e12.g1 PHD_FILE: MSMg01no103_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:09 2005
         (342 letters)



>mm_chr9_59594316_59595058
          Length = 743

 Score =  580 bits (300), Expect = e-170
 Identities = 328/342 (95%), Gaps = 13/342 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagccagggctatacagagaaaccctgtctcgaaaaacaaaaacaaaaacaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||
Sbjct: 213 caggacagccagggctatacagagaaaccctgtctcgaaaaaccaaaa-aaaaa-aaaaa 270

                                                                       
Query: 61  caaaaaaaaaaccaaaaaaaaaaaaaacccccccaaaaaaaaagagaaacaggtatcctg 120
            ||||||||||  ||||||||||||||       ||||||||||||||||||||||||||
Sbjct: 271 -aaaaaaaaaa--aaaaaaaaaaaaaa-------aaaaaaaaagagaaacaggtatcctg 320

                                                                       
Query: 121 atttcaagtccaacatttatacacacaagtatagatgcaatctgatcaggaaactgttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttcaagtccaacatttatacacacaagtatagatgcaatctgatcaggaaactgttat 380

                                                                       
Query: 181 taatatctttgagcacatgattaggtattttgctttacataagaactaaaaatactaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatatctttgagcacatgattaggtattttgctttacataagaactaaaaatactaaag 440

                                                                       
Query: 241 acctagtaattctaaaggctgggcttttagaattacctcttggtcacataagatcccagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acctagtaattctaaaggctgggcttttagaattacctcttggtcacataagatcccagt 500

                                                     
Query: 301 tgatgcatactggggatggatgtgcttttttttt-gttgttg 341
           |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 tgatgcatactggggatggatgtgcttttttttttgttgttg 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 743
Length adjustment: 9
Effective length of query: 333
Effective length of database: 734
Effective search space:   244422
Effective search space used:   244422
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)