BAC Information

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BAC

Clone NameMSMg01-103K07
Chromosome9 (Build37)
Map Location 14,174,889 - 14,175,503
singlet/doubletsinglet
Overlap geneEndod1
Upstream geneLOC100039758, Maml2, Mtmr2, Cep57, 2810485I05Rik, LOC665329, Sesn3
Downstream geneLOC665351, EG547035, Jmjd2d, 0610040D20Rik, Amotl1, EG665374, Piwil4, Fut4, 1700012B09Rik, Ankrd49, Mre11a, LOC100040259, Gpr83, Folr4, Panx1, Hephl1, 2200002K05Rik, Crsp6, 4931406C07Rik, Josd3, 5830418K08Rik, LOC100040375
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103K07.T7 (MSMg01no103_k07.b1)MSMg01-103K07.TJ (MSMg01no103_k07.g1)
ACCAG318459AG318460
length719713
length of high quality
(start - end)
620 (40 - 659)242 (75 - 316)
definitionCHROMAT_FILE: MSMg01no103_k07.b1 PHD_FILE: MSMg01no103_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:38 2005CHROMAT_FILE: MSMg01no103_k07.g1 PHD_FILE: MSMg01no103_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGGTCCGCGGAATTC
TACAGGACTTCCATCGGCCACGTTGAAGTGTGGATTAAGGATCAAGATGG
GCTCCTGAAAGATGAAAGCTGTCAGTATGCTTCCTACAGTCATACAAGGA
TGTTGGCACTTTGGCAGAGGTGAGAATGGCCTGAGTTGAAGTCAACTTAA
CTCTGATATAGTTAGAGACCACCACAAGGGGACAAGAGACAAACAGACCC
CTGACCCTTAACGTACCACCTGTTAAAAGCATACATTCAACATCTTTATT
ATAAAACTCTAGGCCACAAAGTAGAGTATTTACTGACCAAAAGAATCCCC
TTCCAAGACAACTAAGTTAAAATTCAGGCACCCCAAAATAAGAAAGAAAA
AGGGAAATTAAAAACAAAAAACAAAAACAAAAAAAACCCAAAAAACAAAA
CTCAAGTAACTCGTCTTCCCTTGCTTGGTGTTAGCTGGTAGCAAAAAGAC
TAATCACTAACCTTGGGTTGGTTTGCACTGGAAGTGAAGGCTCCTTCAAA
ATGAGGTGGTCCTTTATGGTAGAAGTAGCTCATTAGGGGCTAGGTTCTGA
AGGTTCCATCTCTGCACCTAGCCACTCTGGGCTTCTTGGTCTCTGACTAC
ATGACTGCATTGTTCTTAGCCTGATGCTCCAAACACAAATAATAGAACCC
CTCCTCTATGCCTTTCCCA
NACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCCGAGGAATACCGAATGGCTGA
GAAGCACCTGAAAAAAAAATGCTCAGCATCCTTAATCATCAGGGAAATGC
ATATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGCATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGG
AACACTCCTTCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGA
AATCAGTCTGGCGGTTCCTCATAAAATTGGACATAGTACTACTGAAGGAT
CTCGCAATACCTCTCCTGGGCATATATCCAGAACATGTCCCAACCGGTAT
GAATGACACATGCTCCACTATGTTCATAATAGCCTTATTTATAATAGCCA
GAAGTTGGAAAGAATCCAGATGCCCCTCAGCAGAGGAATGGATACAAAAA
AATGTGATACATTTACACAATGTAGTACTACTCAGCTATTAAAAAGAACG
AATTTATGAAACTCCTAGGCCCATGGCCGGACCTGGAGGGTTTCATCCTG
TACGAGGTTACACATTCCCAAAAGAATTCACCATGTATGTACTCTCTGCT
ACCTGCACCTTATCCTACACCCTTACCACATTGACATATACGATACAATT
TGCCAAACATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_k07.b1 MSMg01no103_k07.b1 CHROMAT_FILE:
MSMg01no103_k07.b1 PHD_FILE: MSMg01no103_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:38 2005
         (620 letters)



>mm_chr9_14174684_14175703
          Length = 1020

 Score = 1021 bits (528), Expect = 0.0
 Identities = 595/624 (95%), Gaps = 18/624 (2%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctacaggac----ttccatcggccacgttgaagtgtggattaaggatcaagatgg 61
           ||||||||||||||    |   ||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctacaggacagcat---atcggccacgttgaagtgtggattaaggatcaagatgg 262

                                                                       
Query: 62  gctcctgaaagatgaaagctgtcagtatgcttcctacagtcatacaaggatgttggcact 121
           |||||||||||||||||||||||||||||||||||||||||||||| || |||  |||||
Sbjct: 263 gctcctgaaagatgaaagctgtcagtatgcttcctacagtcatacaggggtgtcagcact 322

                                                                       
Query: 122 ttggcagaggtgagaatggcctgagttgaagtcaacttaactctgatatagttagagacc 181
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttggcagaggtgggaatggcctgagttgaagtcaacttaactctgatatagttagagacc 382

                                                                       
Query: 182 accacaaggggacaagagacaaacagacccctgacccttaacgtaccacctgttaaaagc 241
           |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 383 accacaaggggacaagagacaaacagacccctgacccttaacatgccacctgttaaaagc 442

                                                                       
Query: 242 atacattcaacatctttattataaaactctaggccacaaagtagagtatttactgaccaa 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 atacattcaacatctttattataaaactctaggccacaaagtagagtatttactgaccaa 502

                                                                       
Query: 302 aagaatccccttccaagacaactaagttaaaattcaggcaccccaaaataagaaagaaaa 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aagaatccccttccaagacaactaagttaaaattcaggcaccccaaaataagaaagaaaa 562

                                                                       
Query: 362 agggaaattaaaaacaaaaaacaaaaacaaaa-aaaacccaaaaaac--aaaactcaagt 418
           |||||||||||||||||||||||||||||||| ||||   |||||||  ||||| |||  
Sbjct: 563 agggaaattaaaaacaaaaaacaaaaacaaaacaaaa---aaaaaaccaaaaac-caa-- 616

                                                                       
Query: 419 aactc--gtcttcccttgcttggtgttagctggtagcaaaaagactaatcactaaccttg 476
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aactcaagtcttcccttgcttggtgttagctggtagcaaaaagactaatcactaaccttg 676

                                                                       
Query: 477 ggttggtttgcactggaagtgaaggctccttcaaaatgaggtggtcctttatggtagaag 536
           ||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 677 ggttggtttgcactgcaagtgaaggcttcttcaaaatgagatggtcctttatggtagaag 736

                                                                       
Query: 537 tagctcattaggggctaggttctgaaggttccatctctgcacctagccactctgggcttc 596
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tagctcactaggggctaggttctgaaggttccatctctgcacctagccactctgggcttc 796

                                   
Query: 597 ttggtctctgactacatgactgca 620
           ||||||||||||||||||||||||
Sbjct: 797 ttggtctctgactacatgactgca 820


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)