BAC Information

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BAC

Clone NameMSMg01-104A10
Chromosome9 (Build37)
Map Location 59,302,377 - 59,396,036
singlet/doubletdoublet
Overlap geneArih1, LOC621119, 4930425N13Rik, Hexa
Upstream gene6030419C18Rik, Cd276, Nptn, 2410076I21Rik, Hcn4, Neo1, LOC100040186, EG665330, Adpgk, Bbs4
Downstream geneBrunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385, LOC100040361, Nr2e3, EG665389, Thsd4, LOC100039792, EG384942
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104A10.T7 (MSMg01no104_a10.b1)MSMg01-104A10.TJ (MSMg01no104_a10.g1)
ACCAG318743AG318744
length709708
length of high quality
(start - end)		642 (47 - 688)588 (72 - 659)
definitionCHROMAT_FILE: MSMg01no104_a10.b1 PHD_FILE: MSMg01no104_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:08 2005CHROMAT_FILE: MSMg01no104_a10.g1 PHD_FILE: MSMg01no104_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,395,567 - 59,396,036)(59,302,377 - 59,302,964)
sequence
GTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCATCATAGCACAGTGAGCTCTTCCCAGAATCCTGGAATTGTCC
TGTCTTATCCATAACTTTATACTTTTCTTGTCACAAATTGCTTCCTGCAG
TTAAAACAAACTTGGCATTTCTCCCACACTTGTTGGGCTGAGAAATAGTT
CTGCTTTTTTTCTTGTATAAAACTGTTTTGGCCATTCCCCCACCCTTTCC
TAAGAGCTTCCTGTGTGACCATGGAGTACACATACATTTTTCATAACACT
TATCTTAATATAAGCTGTCTATCTCCTCACCTAGGCTGTGAGTTCCTCAA
CAGCAGGGACCAATCTGTGTCTTTGTGTTCCCAGTGCCTGATACACGGTA
GTCATTCAATAAGTGTTTGCTGAAAAAATGAATGATGCTAGAATTAAAAT
ATGCACATTTAATGCTATGAATGCATAGTGACTGTGCTACACGATAGTCA
ACCATAAATGGTAAACAGTAAACCTAGAGTCTTTTACACACCCAAATCTA
GTATTTCTGAAGTCCTAAGGCTAGGGAAAGGTTGCTAAGAACAGACCCAG
GCTTATACAAAGCCCCTTTTCAGACACTCTCTGAAGGACTTGGGGGTGTA
AATCAAAAGCTTTTAGGCCCTTCCACATCTCTGCAAGGGAAAATTTGCTA
CCTGTAGGC

CGATGAAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACAATTCTCTTGCTCCTGAATCCCAGGTG
CTAGGATTGTTTGCTTGCAACAAACTCAGCTATTTCACAGACATGTAAAA
AAAAGATAGCAGGCTAGATTTCAAGTTCCCAAATAATGCACCCAAGTTTT
CAGTTCTAATATATTTTTCTGCACCATGGCTGGAGCACTTAGTCCCTCCC
AAAATACCCTTTCCTGGTTATTTATATTCCAAAGGAGATACAAATTTTTA
GTTGTATGATCAAGATTATTTAAATAGCTCACCATATAATAGTTCATCCT
TTATAGGGTTCAAAATAAGCCAAAAAGAAAGAAAATGTCAAAGTTAAGAC
CATACTAAGCCAAGTGAGGTTACCTACACATATAACCTCAGTGCACAGGA
AGCTGAGGAAAAAAAGGAGACCAGTTCATACTATATAACAAGACCCTATC
TTGAAAAGCAAACCCAAAATATCAAGTATTTGATAAAACTAATTTGTTGC
ATGGAGTCTCTAGCAAACTACCACATCAGCAATCTAAATATAATTAATAA
AATTTGTAAGTAATAAAATTTGTAAGTCCATGTGTATCAAATAGTTAAAG
AAACTCAAAGTTAGTGTATTTTAGATATATTTAACTAAACCAACAAAATA
TCTGTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_a10.b1 MSMg01no104_a10.b1 CHROMAT_FILE:
MSMg01no104_a10.b1 PHD_FILE: MSMg01no104_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:08 2005
         (642 letters)



>mm_chr9_59395567_59396608
          Length = 1042

 Score =  893 bits (462), Expect = 0.0
 Identities = 468/470 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcatcatagcacagtgagctcttcccagaatcctggaattgtcctgtcttatc 63
           |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 470 ggaattctcatcatagcagagtgagctcttcccagaatcctggaattgacctgtcttatc 411

                                                                       
Query: 64  cataactttatacttttcttgtcacaaattgcttcctgcagttaaaacaaacttggcatt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 cataactttatacttttcttgtcacaaattgcttcctgcagttaaaacaaacttggcatt 351

                                                                       
Query: 124 tctcccacacttgttgggctgagaaatagttctgctttttttcttgtataaaactgtttt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tctcccacacttgttgggctgagaaatagttctgctttttttcttgtataaaactgtttt 291

                                                                       
Query: 184 ggccattcccccaccctttcctaagagcttcctgtgtgaccatggagtacacatacattt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ggccattcccccaccctttcctaagagcttcctgtgtgaccatggagtacacatacattt 231

                                                                       
Query: 244 ttcataacacttatcttaatataagctgtctatctcctcacctaggctgtgagttcctca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 ttcataacacttatcttaatataagctgtctatctcctcacctaggctgtgagttcctca 171

                                                                       
Query: 304 acagcagggaccaatctgtgtctttgtgttcccagtgcctgatacacggtagtcattcaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 acagcagggaccaatctgtgtctttgtgttcccagtgcctgatacacggtagtcattcaa 111

                                                                       
Query: 364 taagtgtttgctgaaaaaatgaatgatgctagaattaaaatatgcacatttaatgctatg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 taagtgtttgctgaaaaaatgaatgatgctagaattaaaatatgcacatttaatgctatg 51

                                                             
Query: 424 aatgcatagtgactgtgctacacgatagtcaaccataaatggtaaacagt 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50  aatgcatagtgactgtgctacacgatagtcaaccataaatggtaaacagt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no104_a10.g1 MSMg01no104_a10.g1 CHROMAT_FILE:
MSMg01no104_a10.g1 PHD_FILE: MSMg01no104_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:08 2005
         (588 letters)



>mm_chr9_59302177_59303164
          Length = 988

 Score = 1114 bits (576), Expect = 0.0
 Identities = 585/588 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaattctcttgctcctgaatcccaggtgctaggattgtttgcttgcaacaaactcagct 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaattctcttgctcccgaatcccaggtgctaggattgtttgcttgcaacaaactcagct 260

                                                                       
Query: 61  atttcacagacatgtaaaaaaaagatagcaggctagatttcaagttcccaaataatgcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttcacagacatgtaaaaaaaagatagcaggctagatttcaagttcccaaataatgcac 320

                                                                       
Query: 121 ccaagttttcagttctaatatatttttctgcaccatggctggagcacttagtccctccca 180
           |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaagttttctgtcctaatatatttttctgcaccatggctggagcacttagtccctccca 380

                                                                       
Query: 181 aaataccctttcctggttatttatattccaaaggagatacaaatttttagttgtatgatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaataccctttcctggttatttatattccaaaggagatacaaatttttagttgtatgatc 440

                                                                       
Query: 241 aagattatttaaatagctcaccatataatagttcatcctttatagggttcaaaataagcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagattatttaaatagctcaccatataatagttcatcctttatagggttcaaaataagcc 500

                                                                       
Query: 301 aaaaagaaagaaaatgtcaaagttaagaccatactaagccaagtgaggttacctacacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaaagaaagaaaatgtcaaagttaagaccatactaagccaagtgaggttacctacacat 560

                                                                       
Query: 361 ataacctcagtgcacaggaagctgaggaaaaaaaggagaccagttcatactatataacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ataacctcagtgcacaggaagctgaggaaaaaaaggagaccagttcatactatataacaa 620

                                                                       
Query: 421 gaccctatcttgaaaagcaaacccaaaatatcaagtatttgataaaactaatttgttgca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaccctatcttgaaaagcaaacccaaaatatcaagtatttgataaaactaatttgttgca 680

                                                                       
Query: 481 tggagtctctagcaaactaccacatcagcaatctaaatataattaataaaatttgtaagt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tggagtctctagcaaactaccacatcagcaatctaaatataattaataaaatttgtaagt 740

                                                           
Query: 541 aataaaatttgtaagtccatgtgtatcaaatagttaaagaaactcaaa 588
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aataaaatttgtaagtccatgtgtatcaaatagttaaagaaactcaaa 788


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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