BAC Information

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BAC

Clone NameMSMg01-104C18
Chromosome9 (Build37)
Map Location 23,723,585 - 23,724,020
singlet/doubletsinglet
Overlap genenone
Upstream geneBmper, LOC100040866, LOC100040878, LOC100040893
Downstream geneNpsr1, Dpy19l1, Cypt4, Tbx20, LOC666251
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104C18.T7 (MSMg01no104_c18.b1)MSMg01-104C18.TJ (MSMg01no104_c18.g1)
ACCAG318850AG318851
length723722
length of high quality
(start - end)
439 (45 - 483)228 (73 - 300)
definitionCHROMAT_FILE: MSMg01no104_c18.b1 PHD_FILE: MSMg01no104_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:20 2005CHROMAT_FILE: MSMg01no104_c18.g1 PHD_FILE: MSMg01no104_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTAAACTGTCCTCCAATTCTGCATTGCCAATAACCTAAGAACATGC
TTAACATAACAAAATGATTGAAAACTCAAAGGGATAATTTATGATGTAAA
AATTACACAAGATTTACATATTATTGTTCATAGATAGTCCTAAGGGACTG
TAGCCATGTCTGTTAATTAGGATTGTCTGCAGCTTCTTTGGGGTTACCGT
GGCAATGAGGCAAACCAAGAGCTGTACCAGCTGGTGCTTTGCAGCCAAGC
TACTGACCCTCTCTGCAATCCATTATTTTTATTTTATAATTTATCTTTTG
TGGAATAATTTTATTTCTCTTATTTGCTAGAGAGCTACATAGTGAAGTCT
AATGCCGTCCAAGCTTCTTCATTTTATGGGCATAACATTTTGATTAAAAT
CTAGAGACAGAATATAAATTCCTTTGATTATAGAGATAGAGGGATGTCAT
TTATTGGATATCCATTATGTGCTGTGAATCTCTTATTCAATCCTCAGAAT
GACTCTCTGTGCTGTTTGCGTCAGAGATGTTTTTAATGATGAGCAGAGCA
TGCATAACATGTTGTGGCTTTCCTTACGCTTACAGTGATTATTTTCAGAC
TTGGTATTGAAATCATCCTTACTCCCGCCATCTGCACTTGTCCACTTCCC
TACAACTTGGCCTCCTTCCATTA
TGAACGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGCAATAACGAATGGCAGAGA
AGCACCTGAAAAAATGTTCAACACCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGCTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCA
GTCTGGCGGTTCCTCAGGAAATTGTACATAGCACTACCGGAGGATCCAGC
AATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACTGGTATGAAGG
ACACATGCTCCACTATGCTCATAGTAGCCTTATTTATAATAGCCAGAAGC
TGGAAAGACACCATATGCCCCTCAATATATGCAAGCATACATACAATGTG
TTACTCCTACAATTTGGAGCACTACTCATCTATTATACCGAACGATTTTA
TGTACCTTCTACCCATATGGACGGAATTTGGAGGGCCCCTTCTTGATCGC
GATACTTTTCTCTCAATGTATTCAACCGCTCTGTCCCCCCTGTTTTTTTT
ACCTTATGTTCAACCCTAGGATCCCCTTACCCACTATCTTGTTCCCCACC
ACCATGCCACTCTACATAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_c18.b1 MSMg01no104_c18.b1 CHROMAT_FILE:
MSMg01no104_c18.b1 PHD_FILE: MSMg01no104_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:20 2005
         (439 letters)



>mm_chr9_23723544_23724382
          Length = 839

 Score =  828 bits (428), Expect = 0.0
 Identities = 434/436 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattctctaaactgtcctccaattctgcattgccaataacctaagaacatgcttaacat 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gaattctctaaactgttctccaattctgcattgccaataacctaagaacatgcttaacat 418

                                                                       
Query: 64  aacaaaatgattgaaaactcaaagggataatttatgatgtaaaaattacacaagatttac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 aacaaaatgattgaaaactcaaagggataatttatgatgtaaaaattacacaagatttac 358

                                                                       
Query: 124 atattattgttcatagatagtcctaagggactgtagccatgtctgttaattaggattgtc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 atattattgttcatagatagtcctaagggactgtagccatgtctgttaattaggattgtc 298

                                                                       
Query: 184 tgcagcttctttggggttaccgtggcaatgaggcaaaccaagagctgtaccagctggtgc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tgcagcttctttggggttaccgtggcaatgaggcaaaccaagagctgtaccagctggtgc 238

                                                                       
Query: 244 tttgcagccaagctactgaccctctctgcaatccattatttttattttataatttatctt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 tttgcagccaagctactgaccctctctgcaatccattatttttattttataatttatctt 178

                                                                       
Query: 304 ttgtggaataattttatttctcttatttgctagagagctacatagtgaagtctaatgccg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 ttgtggaataattttatttctcttatttgctagagagctacatagtgaagtctaatgccg 118

                                                                       
Query: 364 tccaagcttcttcattttatgggcataacattttgattaaaatctagagacagaatataa 423
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 tccaagtttcttcattttatgggcataacattttgattaaaatctagagacagaatataa 58

                           
Query: 424 attcctttgattatag 439
           ||||||||||||||||
Sbjct: 57  attcctttgattatag 42


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)