BAC Information

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BAC

Clone NameMSMg01-104F18
Chromosome9 (Build37)
Map Location 15,466,962 - 15,467,068
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665374, Piwil4, Fut4, 1700012B09Rik, Ankrd49, Mre11a, LOC100040259, Gpr83, Folr4, Panx1, Hephl1, 2200002K05Rik, Crsp6, 4931406C07Rik, Josd3, 5830418K08Rik, LOC100040375, LOC100039955, BC017612, Ccdc67, LOC665461
Downstream geneLOC330891, Slc36a4, Mtnr1b, Fat3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104F18.T7 (MSMg01no104_f18.b1)MSMg01-104F18.TJ (MSMg01no104_f18.g1)
ACCAG318991AG318992
length706698
length of high quality
(start - end)
---109 (76 - 184)
definitionCHROMAT_FILE: MSMg01no104_f18.b1 PHD_FILE: MSMg01no104_f18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:36 2005CHROMAT_FILE: MSMg01no104_f18.g1 PHD_FILE: MSMg01no104_f18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCAAAATTTNCNCCCTNNCNACTCCTTTCAAAAANATCCNCNAATTCCA
TTCCCCANACCCCNCTGTNACACANAAACTCTGNNCNCANNTGATCCAAN
ATNCCCANATNNCNAAATGANACCNCTGNNCCCCTCAACCNCCCACCCNT
TTTACAACCCCTCNCTCATCNACTGAATCTCAACTTTCTTATTCCCCNNN
NCTTNNCCCTCCCNCCAACANCCCNCCCCANNACCNCNCACCCNTTTTTT
TCTCCCCCCCCAACCNCAAANCCCCNCCCCNCCCCTTTTCCCCTATCCCC
CCCCCCANNNNNCCNCCCTACCNNAAACCCCCCCCCCCCNCCCCCCCCCC
CNNCCNNNNCCCCCCTCCTCCCCCCCCCCTCCCTCCCCCCCTCCTTAGGG
TGAAGGGGAAGGACTAGGAGGGGGAGGGGGGAGAGAGGAGGGAGAGGGGG
GGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGCGGG
GGGGGGGGAGATAGAAGGGGGAAAAAGAGGAGAANTTTTTTTTTTGTTTT
TTTTTTATANAGCAAGAGGGGGTGGGGCCNNCCNCNCCCCCNCTNCNCCC
CCTCCCCGCCGGGGGGGTTCTTCCCTCTNCCCCCCCCCNNCNNCTCCCTT
CCNNCCCCCTCTCCCCCCCCNTCCTTCTCCCCCTTCCCTTCTTCCCGGCC
TGTCCG
TTCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATGGTATTGCCACAGTGAGGAAGCC
ACATTGAGACCCCTGGGATGAGGACCTCACTGATAAGACCTCTGAAATGA
TGAAGGTGAGTAGAGAACCACTGAAAACTCCACCAATCAAGGGCTGGTAA
CTGGGCAATGGCATCAGACTGGCATGTTTGCCTTTGCTGGTGATGAACCT
TGGCTCCCTTCAAGGTCACCAGAGGTCTACAGAGAGTTTACATTCTTGCT
ACTACAACTGCCATCTTATTACCAACCGCACCACATACATATTGATATAT
AACACCATGTGCCCCTCCACCACCTCCTTAACCATGACTTCCATCTGCAC
CGATTTTATCTGAACCCTATCTACTGCTTCCATGTATCACAGGTGCTGCC
TACACTGTCAAGTCTCCTTGTTTCTTACACCCCAAATGGCCCATTCCCTA
CCCCTTGCATACGTTACTGACTGCTTCGTTTCCCCCCCCGCCCACCCTGC
TAAAATATGACCTCAAGGTTACCTTGCCTCATATCCTGGTCACCCCCCCC
CTTCTTTATCACACGCCTTTCTTTTTCCCACATCACCCTATACTACGATC
TCTCCTTTCCCCATACCCCTTCCCTTACCTTAACTATTCCCGCCTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_f18.g1 MSMg01no104_f18.g1 CHROMAT_FILE:
MSMg01no104_f18.g1 PHD_FILE: MSMg01no104_f18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:36 2005
         (109 letters)



>mm_chr9_15466762_15467268
          Length = 507

 Score =  192 bits (99), Expect = 7e-54
 Identities = 106/109 (97%), Gaps = 2/109 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggtattgccacagtgaggaagccacattgagacccctgggatgaggacctcactgata 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 201 atggtattgccacagtgaggaagccacattgagacccctgggatgaggacctc--tgata 258

                                                            
Query: 61  agacctctgaaatgatgaaggtgagtagagaaccactgaaaactccacc 109
           ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 259 agacctctgaaatgatgaaggggagtagagaaccactgaaaactccacc 307


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 109
Length of database: 507
Length adjustment: 8
Effective length of query: 101
Effective length of database: 499
Effective search space:    50399
Effective search space used:    50399
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)