BAC Information

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BAC

Clone NameMSMg01-104I01
Chromosome9 (Build37)
Map Location 24,191,476 - 24,349,066
singlet/doubletdoublet
Overlap geneDpy19l1
Upstream geneBmper, LOC100040866, LOC100040878, LOC100040893, Npsr1
Downstream geneCypt4, Tbx20, LOC666251, LOC100040960, Herpud2, LOC666297, 9130004C02Rik, Sept7, EG666327, 2310005P05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104I01.T7 (MSMg01no104_i01.b1)MSMg01-104I01.TJ (MSMg01no104_i01.g1)
ACCAG319099AG319100
length712703
length of high quality
(start - end)
439 (71 - 509)131 (126 - 256)
definitionCHROMAT_FILE: MSMg01no104_i01.b1 PHD_FILE: MSMg01no104_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:47 2005CHROMAT_FILE: MSMg01no104_i01.g1 PHD_FILE: MSMg01no104_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:47 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(24,348,630 - 24,349,066)(24,191,476 - 24,191,606)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAATCCGCGGAATT
CTTTGTTTAGTTCTCAGCCCCATTTTTAATGGGGTTATTTGATTTTCTGG
AGTACACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCT
GATTTAGGATAGGTAAAGATCCTTTCCAAATCTGTTGGTGGCCTTTTTAA
GCAGAATATACTTACATGGTCTGAAACACCACAGATTTTAGATGTCAGAA
ATTTCAAAATAATTGTTCCACACCACCAAAAACAGCCTTGGATTAGCTAG
AAAATAAATAGGATATGACTCAGTTAAAAATATTCAATGCTATAGGTAGA
AGAGCACGACTAAATCATGTGAGATGCACCAGTGTGCTGGGAAGAGGGAA
TGGCAAGACAAGGAAAGCCCTTTACAGTTCTGTTCATTAACAAGGAATTA
ATTTTGATAACACCGTGACACTGTTATACCTAAAACATCAGAGTACTACA
TATCCTATACCTAAAAATAATTCTAAAAAAACCAAACCAAACCAAAAAAC
TTCCCTTTAGTCTCTTTGAAGATATAGACCATTTTATTCCTACACATTAT
CCTCAGCTAACTTGAGCACCCTGCTATGTGAGAGAGCCAATTCCTGACAT
TGCTAACAATATTCTGCTATGCTTGGCAGAGAGGAACCCAGCATACTTGT
CTTCTGAGAGTT
ATGATAGTGTTAGGCCTGGCGACCGCCTGATACGAAGCGGGGGGTGACCT
ATACAAGTTTCAACAGAATTCCAGATTCAAGTTTACACGATACTTATGGC
AATAAAATAATAATAATCACAATCCAGCAAGATCTAATCATAGGTTGTTA
GATAAGCAAAAGGCAGGGAAATATGCTGATATTTAAAAGAATAACCAACT
AACAGAAATGGGCACAGAACGTATAAGGAACAGTAGACAGGAAAATTTTT
ATTACAGCTACACACATATGTTCATAAGGCAAGTAGAAATATGGAAGATT
CTTTTTAAAGACTCTTTTTTTTTTCTGAGACAATGGCTCAGTGTGTAAGA
ATGCTGTTTGTAAGCATGACCACCTGAATTTAAACCCCCAGTGTTCATAT
ACAAAATCAGGCCTGGCAGCCCTGTAGCTATGGCCTCAGGATTGGGGGTG
CCCATATCGGTATACCCTGATAGCTTGCTGGCCGTCTAACCTTGAGGAAT
CAGTGATCTTCCGGTTCAGGGACTGGCGTATCCCCACTCAACATAGTGCA
GCGTGCCCGAGCACTATACCTGAATGCGGTTGCCTTTATTTGGGCCTCCC
CCTTGTAACTGGCTTCCCCATACTACTGGTACTTAAACTTTTTTCCCCTA
CATCACATCCCATTCTTTTTTTTCTTCCTCTTCTTCCCTCCTTTAAATTG
CAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_i01.b1 MSMg01no104_i01.b1 CHROMAT_FILE:
MSMg01no104_i01.b1 PHD_FILE: MSMg01no104_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:47 2005
         (439 letters)



>mm_chr9_24348302_24349140
          Length = 839

 Score =  814 bits (421), Expect = 0.0
 Identities = 433/437 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catttttaatggggttatttgattttctggagtacaccttcttgagttctttatatatat 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 765 catttttaatggggttatttgattttctggattacaccttcttgagttctttatatatat 706

                                                                       
Query: 61  tggatattagtcccctatctgatttaggataggtaaagatcctttccaaatctgttggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 tggatattagtcccctatctgatttaggataggtaaagatcctttccaaatctgttggtg 646

                                                                       
Query: 121 gcctttttaagcagaatatacttacatggtctgaaacaccacagattttagatgtcagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 gcctttttaagcagaatatacttacatggtctgaaacaccacagattttagatgtcagaa 586

                                                                       
Query: 181 atttcaaaataattgttccacaccaccaaaaacagccttggattagctagaaaataaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 atttcaaaataattgttccacaccaccaaaaacagccttggattagctagaaaataaata 526

                                                                       
Query: 241 ggatatgactcagttaaaaatattcaatgctataggtagaagagcacgactaaatcatgt 300
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 525 ggatatgactcagttaaaaatattcaatgctatgggtagaagagcacgactaaatcatgt 466

                                                                       
Query: 301 gagatgcaccagtgtgctgggaagagggaatggcaagacaaggaaagccctttacagttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gagatgcaccagtgtgctgggaagagggaatggcaagacaaggaaagccctttacagttc 406

                                                                       
Query: 361 tgttcattaacaaggaattaattttgataacaccgtgacactgttatacctaaaacatca 420
           ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tgttcattagcaaggaattaaatttgataacaccgtgacactgttatacctaaaacatca 346

                            
Query: 421 gagtactacatatccta 437
           |||||||||||||||||
Sbjct: 345 gagtactacatatccta 329


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no104_i01.g1 MSMg01no104_i01.g1 CHROMAT_FILE:
MSMg01no104_i01.g1 PHD_FILE: MSMg01no104_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:47 2005
         (131 letters)



>mm_chr9_24191276_24191806
          Length = 531

 Score =  253 bits (131), Expect = 2e-72
 Identities = 131/131 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcaagatctaatcataggttgttagataagcaaaaggcagggaaatatgctgatattta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcaagatctaatcataggttgttagataagcaaaaggcagggaaatatgctgatattta 260

                                                                       
Query: 61  aaagaataaccaactaacagaaatgggcacagaacgtataaggaacagtagacaggaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagaataaccaactaacagaaatgggcacagaacgtataaggaacagtagacaggaaaa 320

                      
Query: 121 tttttattaca 131
           |||||||||||
Sbjct: 321 tttttattaca 331


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 131
Length of database: 531
Length adjustment: 8
Effective length of query: 123
Effective length of database: 523
Effective search space:    64329
Effective search space used:    64329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)