BAC Information

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BAC

Clone NameMSMg01-104O06
Chromosome9 (Build37)
Map Location 71,621,275 - 71,764,546
singlet/doubletdoublet
Overlap geneTcf12
Upstream geneAdam10, Lipc, LOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2, Grinl1a, AA407270, LOC547043, LOC100040537, Cgnl1
Downstream geneEG666001, LOC665959, EG665964, LOC665970, Suhw4, LOC100041760, Mns1, LOC666007, Tex9, 4930509E16Rik, Rfxdc2, Nedd4, EG639396, Prtg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104O06.T7 (MSMg01no104_o06.b1)MSMg01-104O06.TJ (MSMg01no104_o06.g1)
ACCAG319388AG319389
length694689
length of high quality
(start - end)
426 (74 - 499)407 (72 - 478)
definitionCHROMAT_FILE: MSMg01no104_o06.b1 PHD_FILE: MSMg01no104_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:18 2005CHROMAT_FILE: MSMg01no104_o06.g1 PHD_FILE: MSMg01no104_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,764,121 - 71,764,546)(71,621,275 - 71,621,681)
sequence
ATATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCCCTCTTGCCAAGAAGATAGGCCTGTAGCTGTCAAAGAAGATCT
CCTATGCAGGTCTTTTGATGTCCAATTAGTCATTATGTTGCTGAACAGGA
GGACAGACAGAGATTAATAGCTGAGAATCTTAGAAATTTACATTTGTAAT
AATCCCAATGGAGCTAAAGACATTAAGATTCGGAGGACATGTTCGGCTCA
GCTTGCCTCAGTAGGACTGAGGTTATTAATATGCATAAATCACCAAGTCA
GACGTTCATTCTGAAGCCCTTGTGGATTTTAAAGCCTTCATTAAGCCTTT
CCCAACTTCAGGCTAGCATCAGGAAAGCTTTCACGCAACTAGTTTGTTGA
TTCCCTACTTTCTCAAAAATGTATCCTTTGAGAATAAAGAGCTTTGATGC
AGGAGGCTGGGAGAGGTTGGTAAAACAATCATTAATGGCTATAGTAACCT
AATACTGTAGGAGTGTTTGTGCTCTTAATATCCTTGCTCTTTGAAGCAGT
AGAAGTATTTGTAGATAAACTTACATTATTAATCCACCCATACCTTAAAA
ACCTCTGGTGAGAAGGCAAAGGGTTTTCTTTCTTCTCTCCGTGTATAACA
AATGCTCAGCGAGATTGTTAGATTGAGGCCCTGTGCCTTGAAGC
ATCCATGAAGTGGTAGGCTGGCGCCGCCTGTTCCCAAXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTCTGTAGACCAGGCTGGCCTTGAACTC
AGAGTGATCTTCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGT
GCCACCACTGCCCGGCTGCCACTGAGGTTTTATAGAACTGTGGGATAACT
GTGAACAGCGGGCTGGTAGCTGGGCTGGTGGTAGAGAAACAACGTATGAG
CAAAACCAGGTACTGGGAAATGAGTGTGTCGAGCCCTCACTCAGGGGCAG
GAAATAGACAGCTCACCCGAGGGAGAAGTGGAAGGGTGTGGGGGCGGTGT
CTGTGGCGTGTAGGGTAGGGACTCCTCCCTCGAGGAGGAAACTGAACCAC
CTGCCACCCGTCTATTCCCACTCAGACCCTTGAGAGCGTTTGCAGAAAGT
ACATGCTCAGCAAACATTTGCTGACCATATATACACCATTTACCCAGCAT
GCCTGCCCCCTTCTTTCCCAACAGGTAGTCTAATGATTAAAACATATAAA
AATATTGGTAATAGATGTGGAAGCGAGGTGAGCAGCATAATCTGCCTGGG
CTAGGCCGCTGCCTCTGTCTCTGCTGTCACTACCGATATTCCAGCCCCAC
CATTCTGAATGGATAGCAAGCCTGCGCTGCTCTAGCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_o06.b1 MSMg01no104_o06.b1 CHROMAT_FILE:
MSMg01no104_o06.b1 PHD_FILE: MSMg01no104_o06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:18 2005
         (426 letters)



>mm_chr9_71763921_71764746
          Length = 826

 Score =  793 bits (410), Expect = 0.0
 Identities = 422/426 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taggcctgtagctgtcaaagaagatctcctatgcaggtcttttgatgtccaattagtcat 60
           |||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||
Sbjct: 626 taggcctgtagctgtcaaagaagatctcctctgcaggtcttttgatgtttaattagtcat 567

                                                                       
Query: 61  tatgttgctgaacaggaggacagacagagattaatagctgagaatcttagaaatttacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tatgttgctgaacaggaggacagacagagattaatagctgagaatcttagaaatttacat 507

                                                                       
Query: 121 ttgtaataatcccaatggagctaaagacattaagattcggaggacatgttcggctcagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ttgtaataatcccaatggagctaaagacattaagattcggaggacatgttcggctcagct 447

                                                                       
Query: 181 tgcctcagtaggactgaggttattaatatgcataaatcaccaagtcagacgttcattctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tgcctcagtaggactgaggttattaatatgcataaatcaccaagtcagacgttcattctg 387

                                                                       
Query: 241 aagcccttgtggattttaaagccttcattaagcctttcccaacttcaggctagcatcagg 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 386 aagcccttgtggattttaaagccttcattaagcctttcccaacttcaggctaacatcagg 327

                                                                       
Query: 301 aaagctttcacgcaactagtttgttgattccctactttctcaaaaatgtatcctttgaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aaagctttcacgcaactagtttgttgattccctactttctcaaaaatgtatcctttgaga 267

                                                                       
Query: 361 ataaagagctttgatgcaggaggctgggagaggttggtaaaacaatcattaatggctata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ataaagagctttgatgcaggaggctgggagaggttggtaaaacaatcattaatggctata 207

                 
Query: 421 gtaacc 426
           ||||||
Sbjct: 206 gtaacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no104_o06.g1 MSMg01no104_o06.g1 CHROMAT_FILE:
MSMg01no104_o06.g1 PHD_FILE: MSMg01no104_o06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:18 2005
         (407 letters)



>mm_chr9_71621075_71621881
          Length = 807

 Score =  772 bits (399), Expect = 0.0
 Identities = 405/407 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctctgtagaccaggctggccttgaactcagagtgatcttcctgcctctgcctcccaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctctgtagaccaggctggccttgaactcagagtgatcttcctgcctctgcctcccaagt 260

                                                                       
Query: 61  gctgggattaaaggcatgtgccaccactgcccggctgccactgaggttttatagaactgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgggattaaaggcatgtgccaccactgcccggctgccactgaggttttatagaactgt 320

                                                                       
Query: 121 gggataactgtgaacagcgggctggtagctgggctggtggtagagaaacaacgtatgagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggataactgtgaacagcgggctggtagctgggctggtggtagagaaacaacgtatgagc 380

                                                                       
Query: 181 aaaaccaggtactgggaaatgagtgtgtcgagccctcactcaggggcaggaaatagacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaccaggtactgggaaatgagtgtgtcgagccctcactcaggggcaggaaatagacag 440

                                                                       
Query: 241 ctcacccgagggagaagtggaagggtgtgggggcggtgtctgtggcgtgtagggtaggga 300
           ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 441 ctcacccgagggagaagtggaagggtgtgggggcggtgtctgtggcggggagggtaggga 500

                                                                       
Query: 301 ctcctccctcgaggaggaaactgaaccacctgccacccgtctattcccactcagaccctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcctccctcgaggaggaaactgaaccacctgccacccgtctattcccactcagaccctt 560

                                                          
Query: 361 gagagcgtttgcagaaagtacatgctcagcaaacatttgctgaccat 407
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagagcgtttgcagaaagtacatgctcagcaaacatttgctgaccat 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)