BAC Information

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BAC

Clone NameMSMg01-105N10
Chromosome9 (Build37)
Map Location 92,236,886 - 92,237,344
singlet/doubletsinglet
Overlap gene1700057G04Rik
Upstream geneZic1, Zic4, LOC331000, Plscr1, Plscr2, LOC666850
Downstream genePlscr4, Plod2, LOC100039921, LOC100039931, LOC100039944, LOC667009, LOC100040114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105N10.T7 (MSMg01no105_n10.b1)MSMg01-105N10.TJ (MSMg01no105_n10.g1)
ACCAG320088AG320089
length685725
length of high quality
(start - end)
464 (45 - 508)---
definitionCHROMAT_FILE: MSMg01no105_n10.b1 PHD_FILE: MSMg01no105_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:36 2005CHROMAT_FILE: MSMg01no105_n10.g1 PHD_FILE: MSMg01no105_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCG
GAATTCTTTATTCCCCATGATCTGGGAACTTGGGGATTGTAGTGGCATTC
CTGGCTTCTCTCCATCACAGTCCAGTGCTACCCATCTCACAAGCTGTAGA
AAATAGACAAACGACCCCAGCCCTTGACAAGTATCCATATAGTGAAAGAC
AATCGTGTGTTCTATACATAAAGGACAAATTATTGTTCAGAACTCCAAGT
TATTCTTCTTGGCGGGATGATTTGGTCCTAGAAATAGTAGATCATAATCT
TTGCTTTGGTTTTCTCATTAACACTCTTTTCCATGAACTCGTGCCAAAGC
CTTCATATAAATCGCGTGAGTCACCTGTGACTTTTGTCTCTCAAATTACA
CATTAAAGTGTGAATGGTAAGGGTTTTGTGTTATTTTTTTTCCAGGGAGA
CATGAACAGATGTCTTCTCACTCAAGATAGGGCACCACTAACCTATCAAA
GTAACAACCGTATCAAAGTCCATTTTGAGGCATTTTACCGGACTGTGTGC
ATAAGGTTACATACAGGAGCATGGATGTCTCCCAGGCATCTGCATCATGT
AAAAGCTTATCACATTCCGGCCTGTTTTGCAACCCCCCAAAGGTTCATTC
TTATAGCTTTCAGTTAAACTTGTAGACAGCTCAAA
CCCCCTAGGTCCGTTCCGCCGAATGATATXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTGT
TACAGAAGTATTAGCATCATGAATCACTGAAGTATCTAAGCACAGAAATA
TGAAGCATTCTGACCCTCAATATCAATGTGATCACAAAGTGCTAGAATGG
GGCGTGGGTGGTCAAAGGACAGGCTTATACGCGAGCTCTTAGAATTCTGT
TTATCTGGTTTATATGCAAAATACATGATGTCATATAGAATTCATGCATG
CCTAGTTAATTTTAGAGGCACATTTTATCATTTATTGCATTTATTTTTCA
CGCCTGAACTCATGATTTTTTTTTCTATATTATCTCTTTAGTCACCATTT
CTTAACTGTAAGAAAATAATCTTCTTCACTATAACATCACTACTATATAC
GCTGAACCTTCCGGTAATTCTACTCGGTACCAGCTGCCTCCTCTCCCTCT
CTTCTTATAAACCTATCCCCGTTTCCTTTTCTCCCTCCAATCCAAAACCC
TATGCACCTATACCTATTCCCCCCACCACATTCCTATACCCTCTCCGCTT
CCATCCCCACTTAACGCCATGACAATTCTTTAAACCCCACCTCATCCTTA
TTTCTTTACTTCCCCCCTCCCCACCACCTCAGATGTTCCCCCCCCACCAA
TCACCTTCCATACCTCCCCTCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_n10.b1 MSMg01no105_n10.b1 CHROMAT_FILE:
MSMg01no105_n10.b1 PHD_FILE: MSMg01no105_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:36 2005
         (464 letters)



>mm_chr9_92236680_92237544
          Length = 865

 Score =  826 bits (427), Expect = 0.0
 Identities = 451/459 (98%), Gaps = 1/459 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcttta-ttccccatgatctgggaacttggggattgtagtggcattcctggcttct 65
           |||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctttattttcacatgatctgggaacttggggattgtagtggcattcctggcttct 266

                                                                       
Query: 66  ctccatcacagtccagtgctacccatctcacaagctgtagaaaatagacaaacgacccca 125
           |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 267 ctccatcacagtccagtgttacccatctcacaagctgtagaaaatagacaaatgacccca 326

                                                                       
Query: 126 gcccttgacaagtatccatatagtgaaagacaatcgtgtgttctatacataaaggacaaa 185
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| 
Sbjct: 327 gcccttgacaagtatccatatagtggaagacaatcgtgtgttctatacataaaggacaag 386

                                                                       
Query: 186 ttattgttcagaactccaagttattcttcttggcgggatgatttggtcctagaaatagta 245
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 387 ttattgttcagaactccaagttattctttttggcgggatgatttggtcctagaaatagta 446

                                                                       
Query: 246 gatcataatctttgctttggttttctcattaacactcttttccatgaactcgtgccaaag 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gatcataatctttgctttggttttctcattaacactcttttccatgaactcgtgccaaag 506

                                                                       
Query: 306 ccttcatataaatcgcgtgagtcacctgtgacttttgtctctcaaattacacattaaagt 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ccttcatataaatcgcgtgagtcacctgtgacttttgtctctcaaattacacattaaagt 566

                                                                       
Query: 366 gtgaatggtaagggttttgtgttattttttttccagggagacatgaacagatgtcttctc 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gtgaatggtaagggttttgtgttattttttttccagggagacatgaacagatgtcttctc 626

                                                  
Query: 426 actcaagatagggcaccactaacctatcaaagtaacaac 464
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 627 actcaagatagggcaccactaacctatcaaagtaacaac 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 865
Length adjustment: 10
Effective length of query: 454
Effective length of database: 855
Effective search space:   388170
Effective search space used:   388170
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)