Query= MSMg01no105_o16.b1 MSMg01no105_o16.b1 CHROMAT_FILE:
MSMg01no105_o16.b1 PHD_FILE: MSMg01no105_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:42 2005
(434 letters)
>mm_chr9_118684272_118685105
Length = 834
Score = 669 bits (346), Expect = 0.0
Identities = 399/432 (92%), Gaps = 25/432 (5%)
Strand = Plus / Plus
Query: 4 gaattctatccaatgtctcgatcatcgcctacactagatagaagcccagggagtgcagag 63
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctatccaatgacttgatcatcgcctacactagatagaagcccagggagtgcagag 263
Query: 64 atctgccttctctcattagctattaacccccaacacctacctccaaacctggtctcacgt 123
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atcttccttctctcattagctattaacccccaacacctacctccaaacctggtctcacgt 323
Query: 124 gagtgtctccacagaaagagcccttgtgaaggaacaaaaacctatgccattctgcaaggc 183
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gagtctctccacagaaagagcccttgtgaaggaacaaaaacctatgccattctgcaaggc 383
Query: 184 tgctgctcaaagacataggatatgctgtgagctcccactgggattccctccttaaccagt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgctgctcaaagacataggatatgctgtgagctcccactgggattccctccttaaccagt 443
Query: 244 ttgtgctgtgatttgcagtgatttttgccacaggaatgtgtgtgtgtgtgtgtgtgtgtg 303
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttgtgctgtgatttgcagtgatttttgccacaggaatgtgtgtgtgtgtgt--------- 494
Query: 304 tgtgtgtgtgtgtgtctatttttcaaac-atcaagcagaggaaatggtgaaagagaagtt 362
||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 495 ---------------ctatttttcaaaccatcaagcagaggaaatggtgaaagagaagtt 539
Query: 363 gtttctctctggcattttgtcttatccacgtaaaggtagaggagagggggtaaggagagg 422
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct: 540 gtttctctctggcattttgtcttagccacgtaaaggtagaggagagggggtggggagaag 599
Query: 423 tcaacactgggt 434
||||||||||||
Sbjct: 600 tcaacactgggt 611
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space: 350625
Effective search space used: 350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no105_o16.g1 MSMg01no105_o16.g1 CHROMAT_FILE:
MSMg01no105_o16.g1 PHD_FILE: MSMg01no105_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:42 2005
(395 letters)
>mm_chr9_118785418_118786213
Length = 796
Score = 735 bits (380), Expect = 0.0
Identities = 394/402 (98%), Gaps = 7/402 (1%)
Strand = Plus / Minus
Query: 1 ctttggacggtggaagatgcagagt------taccattgcattttccagtaatgaacac- 53
||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 627 ctttggacggtggaagatgcagagtggcagataccattgcattttccagtaatgaacaca 568
Query: 54 tgcacacccttgtgctgtggtttccgagtggtgagggctagatcgctggaggtggatact 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tgcacacccttgtgctgtggtttccgagtggtgagggctagatcgctggaggtggatact 508
Query: 114 gacatattgcatattcacgaagagtggaagataaataacgctgtttaattgtgtgcaaca 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gacatattgcatattcacgaagagtggaagataaataacgctgtttaattgtgtgcaaca 448
Query: 174 aatcccagcctggcatccccagaaggcatctgattcccattttctagtcatcttcttgcc 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aatcccagcctggcatccccagaaggcatctgattcccattttctagtcatcttcttgcc 388
Query: 234 cagaccacagacctcaaaaccatgaaagcttagctattattaactctttctttgctcttg 293
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cagaccacagccctcaaaaccatgaaagcttagctattattaactctttctttgctcttg 328
Query: 294 aatgaagctgtcttggggccaaatagtcaaagaaggcatctgagggcacaatgacaggtc 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aatgaagctgtcttggggccaaatagtcaaagaaggcatctgagggcacaatgacaggtc 268
Query: 354 ggggtagggtgggagagacaaacatctagtttattaatcagg 395
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ggggtagggtgggagagacaaacatctagtttattaatcagg 226
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 796
Length adjustment: 9
Effective length of query: 386
Effective length of database: 787
Effective search space: 303782
Effective search space used: 303782
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
