Query= MSMg01no106_b04.b1 MSMg01no106_b04.b1 CHROMAT_FILE:
MSMg01no106_b04.b1 PHD_FILE: MSMg01no106_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:59 2005
(576 letters)
>mm_chr9_101505669_101506643
Length = 975
Score = 1002 bits (518), Expect = 0.0
Identities = 552/570 (96%), Gaps = 13/570 (2%)
Strand = Plus / Minus
Query: 1 caaaattgctatcgaaggacctgtcacgcacagtaatgggactgccatgtgtgtagcctt 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 caaaattgctatcaaaggacctgtcacgcacagtaatgggactgccatgtgtgtagcctt 509
Query: 61 tgtgctatattttagaaaatactctttttttcctcaataatttaacttatttaaaacaac 120
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 508 tgtgctacattttagaaaatactttttttttcctcaataatttaacttatttaaaacaac 449
Query: 121 cccatggggtgttggtgatagggaaaaattattccttcaatatccctcctcagaatttaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cccatggggtgttggtgatagggaaaaattattccttcaatatccctcctcagaatttaa 389
Query: 181 ggccaggaaataatttttctctcctcctaatcaggcatatatcccttcattacgcagtga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ggccaggaaataatttttctctcctcctaatcaggcatatatcccttcattacgcagtga 329
Query: 241 aaatcagggctcctgggtatttctgtttatgttttcgttgtatttctaatatcccaggct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aaatcagggctcctgggtatttctgtttatgttttcgttgtatttctaatatcccaggct 269
Query: 301 aatttagtactttgttttcctagccaaattatgctagaggttgagcgcgatcctcggcct 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 268 aatttagtactttgttttcctagccaaattatgctagaggttgagcgtgatcctcggcct 209
Query: 361 cc------t-----cccccccaccccctgccatccagtgtaatgtctgacttacaattgg 409
|| | |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 208 cccccccctgcccccccccccacccc--gccatccagtgtaatgtctgacttacaattgg 151
Query: 410 cttatttcataggcaccctttgttgcatcctatgggatgcctctttggaaataaatattg 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 cttatttcataggcaccctttgttgcatcctatgggatgcctctttggaaataaatattg 91
Query: 470 tatccatcatgaacaaggagagttatgagatgtattattcttgccttcatttgtcagcca 529
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 taaccatcatgaacaaggagagttatgagatgtattattcttgccttcatttgtcagcca 31
Query: 530 gtgagaaacaagctttcttcggcttgcagg 559
||||||||||||||||||||||||||||||
Sbjct: 30 gtgagaaacaagctttcttcggcttgcagg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 975
Length adjustment: 10
Effective length of query: 566
Effective length of database: 965
Effective search space: 546190
Effective search space used: 546190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no106_b04.g1 MSMg01no106_b04.g1 CHROMAT_FILE:
MSMg01no106_b04.g1 PHD_FILE: MSMg01no106_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:59 2005
(331 letters)
>mm_chr9_101357515_101358245
Length = 731
Score = 571 bits (295), Expect = e-167
Identities = 322/331 (97%)
Strand = Plus / Plus
Query: 1 aaggcctccgacttcagtgctatcactgtcttggctcaggtaccacactgcatcaagcta 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 aaggcctccgacttcagtgctatcactgtcttggctcagggaccacactgcatcaagcta 260
Query: 61 gtcttccgatgtgtgttgagagagtcccgtgtgcttctgaatcgatgcttctgactggga 120
||||||||||||| || ||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 261 gtcttccgatgtgggtcgagagagtcccgtgtgcttctgagtcgatgtttctgactggga 320
Query: 121 agtgtcctgttccatggctgctgcattgaaccattgttaggtctgcagcggggctcctaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgtcctgttccatggctgctgcattgaaccattgttaggtctgcagcggggctcctaa 380
Query: 181 tgccatagagagcctgtagaggatggccatgttctgacaactctgcgactgtaaagccct 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 tgccatagagagcctgtagaggatggccatgttctgacaactctgtgactgtaaagccct 440
Query: 241 atccccagtaagccactggcctcccagaggactcttcatttaaggtgcagatcttgccaa 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 atccccagtaagccactggcctcccagaggactcttcagggaaggtgcagatcttgccaa 500
Query: 301 atgaagcacagactagctttaggagatgtcc 331
|||||||||||||||||||||||||||||||
Sbjct: 501 atgaagcacagactagctttaggagatgtcc 531
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space: 232484
Effective search space used: 232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
