Query= MSMg01no106_d04.b1 MSMg01no106_d04.b1 CHROMAT_FILE:
MSMg01no106_d04.b1 PHD_FILE: MSMg01no106_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:17 2005
(413 letters)
>mm_chr9_30127000_30127811
Length = 812
Score = 729 bits (377), Expect = 0.0
Identities = 404/413 (97%), Gaps = 1/413 (0%)
Strand = Plus / Plus
Query: 1 cttaaaaccccatgatcaagatacaggtaagtatggggctgataagagcccatttcctgc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttaaaaccccatgatcaagatacaggtaagtatggggctgataagagcccatttcctgg 260
Query: 61 ctcatagtttgtacctggaatctattctataaagatgtaaagatgaatctctctgacaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcatagtttgtacctggaatctattctataaagatgtaaagatgaatctctctgacaaa 320
Query: 121 tgcccacttcctaaaatatgaatcttattttagtaacattttttcaactttttgatttgt 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 321 tgcccacttcctaaaatatgaatcttattttagtaacattatttcaactttttaatttgt 380
Query: 181 ggtgcacagataataacaaatagtagcataaaattcttaaatgttgctgatgttaatttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtgcacagataataacaaatagtagcataaaattcttaaatgttgctgatgttaatttg 440
Query: 241 tggatattttaccaagagtttatttggacctaaattcttgattagatgttgatggttttc 300
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 441 tggatattttaccaagagtttatttggacctaaattcatgag-agatgttgatggttttc 499
Query: 301 agtactgcatcttattttgtgtcaagacaatgttatattcattaagtggatttgtaagtg 360
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 500 agtactgcatcttattttgtgtcaatacaatgttagattcattaagtggatttgtaagtg 559
Query: 361 ttattttcccctttattttctacactagacttgtagcccttacaatgaggtgt 413
||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 560 ttattttcccctttattttctacactagacttgtagcccttgcaatgaggtgt 612
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 812
Length adjustment: 9
Effective length of query: 404
Effective length of database: 803
Effective search space: 324412
Effective search space used: 324412
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no106_d04.g1 MSMg01no106_d04.g1 CHROMAT_FILE:
MSMg01no106_d04.g1 PHD_FILE: MSMg01no106_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:17 2005
(174 letters)
>mm_chr9_30231562_30232131
Length = 570
Score = 273 bits (141), Expect = 5e-78
Identities = 165/175 (94%), Gaps = 6/175 (3%)
Strand = Plus / Minus
Query: 1 catggaattaatgtatgttgttcagttgttctctcctcagatgctttgcccctcagcgta 60
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 370 catggcattaatgtatgttgttcagttgttctctcctcagatgctttgctcctcagcgta 311
Query: 61 tg-agagaagcaaacaggattggagcatgtagtaatgtttagaatagatagagagaaatg 119
| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 310 -gaagagaagcaaacaggattggagcatgtagcaatgtttagaataga----gagaaatg 256
Query: 120 gtaaagagtcaggcccgtaacaccccgagaagtgaggtgctaaaacttaaaacta 174
| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gcaaagagtcaggcccgtaacaccccgagaagtgaggtgctaaaacttaaaacta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 570
Length adjustment: 8
Effective length of query: 166
Effective length of database: 562
Effective search space: 93292
Effective search space used: 93292
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
