Query= MSMg01no106_d08.b1 MSMg01no106_d08.b1 CHROMAT_FILE:
MSMg01no106_d08.b1 PHD_FILE: MSMg01no106_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:18 2005
(579 letters)
>mm_chr9_81636470_81637448
Length = 979
Score = 516 bits (267), Expect = e-150
Identities = 294/303 (97%)
Strand = Plus / Minus
Query: 277 gttgcatggagaatactctgtgccactaagggtgcagcttgagcatatgggaccttaaag 336
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 979 gttgcagggagaaaactctgtgccactaagggtgcagcttgagcatatgggaccttaaag 920
Query: 337 cctaccccaacaataatacacttcctccaatacaaccatacttatcccaacaaagccaca 396
|||| ||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 919 cctatcccaacagtaacacacttcctccaatacagccatacttatcccaacaaagccata 860
Query: 397 cctcctaatagtgatacttcttatgggcctagcattcaaacacattagtctttggggcca 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 cctcctaatagtgatacttcttatgggcctagcattcaaacacattagtctttggggcca 800
Query: 457 ttcctattcaaaccaccacacttattcaccatctatatcctggtaatgtgaacttttaaa 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ttcctattcaaaccaccacacttattcaccatctatatcctggtaatgtgaacttttaaa 740
Query: 517 tatactttgatttatcttaattttacttttttagttttatagtactgaaaggtgagttta 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 739 catactttgatttatcttaattttacttttttagttttatagtactgaaaggtgagctta 680
Query: 577 tct 579
|||
Sbjct: 679 tct 677
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no106_d08.g1 MSMg01no106_d08.g1 CHROMAT_FILE:
MSMg01no106_d08.g1 PHD_FILE: MSMg01no106_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:18 2005
(500 letters)
>mm_chr9_81482166_81483064
Length = 899
Score = 874 bits (452), Expect = 0.0
Identities = 488/500 (97%), Gaps = 1/500 (0%)
Strand = Plus / Plus
Query: 1 tggatgtcctttgataatctgtttagtaagttcgtagatcctaggaactgcagatcttaa 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggatgttctttgataatctgtttagtaagttcgtagatcctaggaactgcagatcttaa 260
Query: 61 gacatcaggattacattttgcttggttttgcttctatttaataaaccagccttacttaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacatcaggattacattttgcttggttttgcttctatttaataaaccagccttacttaga 320
Query: 121 aagcttgagactcaggaaggtatttgtaaagctggtgaaagacttggttgcatttagctt 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 aagcttgagactcaggaaggtatttgtaaagctggtgaaagactcggttgcatttagctt 380
Query: 181 cttaatcaactcaataaatggggggtttgtttgttgcttattttgggagcaagatagatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttaatcaactcaataaatggggggtttgtttgttgcttattttgggagcaagatagatg 440
Query: 241 ttaagtctccaaataatctactcattttagtatcaaagattattacaaagcatgaaggag 300
||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||
Sbjct: 441 ttaagtctccaaataatctactcattttagtatcaaagaagag-acaaaacatgaaggag 499
Query: 301 agggtggtgctgtttcttatttcagtatgtttttgttagaatgatagcctctcccagcgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 500 agggtggtgctgtttcttatttcagtatgtttttgttagaatgatagcctctcccagtgt 559
Query: 361 cttacccagcttttggtaagttcttgactcttccattatgtacctgagctcgagtccaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 560 cttacccagcttttggtaagttcttgactcttccattatgtacctgagctccagtccaca 619
Query: 421 ataaacaccaagggaaggaaagcctgaaagagtgcttctgacttgctatgctgtctactt 480
| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 620 aaaaacaccaagggaaggaaagtctgaaagagtgcttctgacttgatatgctgtctactt 679
Query: 481 gagcaccttgtgttctactg 500
||||||||||||||||||||
Sbjct: 680 gagcaccttgtgttctactg 699
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 899
Length adjustment: 10
Effective length of query: 490
Effective length of database: 889
Effective search space: 435610
Effective search space used: 435610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
