BAC Information

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BAC

Clone NameMSMg01-106L14
Chromosome9 (Build37)
Map Location 17,545,174 - 17,545,692
singlet/doubletsinglet
Overlap genenone
Upstream geneEG434373, LOC100040074, LOC100040090, LOC244710
Downstream geneLOC100040508, EG665548, LOC665554, LOC665567, Chordc1, Naalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1, Muc16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106L14.T7 (MSMg01no106_l14.b1)MSMg01-106L14.TJ (MSMg01no106_l14.g1)
ACCAG320728AG320729
length1,2581,235
length of high quality
(start - end)
559 (93 - 651)---
definitionCHROMAT_FILE: MSMg01no106_l14.b1 PHD_FILE: MSMg01no106_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:34 2005CHROMAT_FILE: MSMg01no106_l14.g1 PHD_FILE: MSMg01no106_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTTCTTTTCNTAAACACTGGGCGCTATAGACTCCTATAGGGAGAGGAT
CCGCGGAATTCTGTGTAAGGTTAAATCCCCTTTTAAAGCTGTTTTCTGAT
TCTCATTCCTACCAGAAATGCCCCTCTCCTTTCCTAAATATCCTCACATG
AAATTTGTTCTATATCATCCTTAATTCAGATTCTCAATTTGTTTTCTTTG
TCTTCAGCACGTCTGCGATAACATGCCTTGGAGCATTGGGGTTTGTATTT
GCTGTTGTTTCCTGAATTTCTTTTGGATACCTCACTTCTTTGATATTGCA
TCATCAGAGTTCTTTTTCTCAATGTTTCTTTGAATCTTTTATACTGATCT
TTTCTTCTAGATTTTCTAATTTATTAGTTTGAAAATGTGCCAGTATAGTT
TCCAGTATGTTCTTCCTTTCTACATTAAGTTGAACTGTCTTCAAACTCAG
ATACTTGGTGATATTTTTCATTTTTCAATTTCAATAGGATTGATTTTTAT
ACATTCCAAATATTTCCTGAAATTTTCTTCCATGTTTTTCACTTTGTTTT
GTAAATGAATTACAATTTCACACAATCATTTTCTTTGCTACATATTTAGA
AACTCTTACCACAAAACTATAGTATACATTAAAAAGACATTGTTTTTCAT
CACATTATAGTTCAGTGTTTGATGTCACAAACCTATGCCACAACTAATGG
CTTTCAATTGTATTATTAGAAAATCCCATGCTGGTGAAAGTGAGTGACAG
GAATTTTATAAGTTAGGAGTTTTTTACTCTTGCTTCTTTGAATTATACTG
AGGGCTAAATTCTCCTATTTACTCTCTTTTTAACCGGTTTCATTATAAAA
TTATATTAATATAACCACTGTATTTTTTAGTTAAAGTTGTCTCTCAGGGA
AACTGCTATTTCTTTCTCTGAAATCTATTCTCCAAATTTGATACCCTTCT
TCCGGTGACTGAAAAAAAGCTGGTGCTGCTAGCTATGAAATTTTTTAAAG
GATTATCTTTAGCTTGTTTTATGTTAATTTTTCCCTATATAATTGAATAT
ATTACTTTTATAAATAAAATGATGTAATTCTTTTCCCTAATTTACTTAAA
TGTTCTTGTAAATAACTATAATTACAACTCTCTTTTTACTAACCCTTTAA
CTCAAATTTAATCATGAATTTTTTTATCTTATATATTCTTTACCACCTAT
CTAATTTTTTGTAAATCCGCCTCCTATTACATTTTTTTTTGATTACTAAT
CTATCTTT
GGTTGGTTGTTNTAAGAAGGAAGGCTGGGGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXNCCCAATGAGACTTTCCCNGNNNNNN
NNNNNNGNNNGGGGNNGNNGGCCTTAAAAAACTTTCCNNNNNNNGNNNNN
NNNNGNNNNNGNNNGNGGGGGNNNNGGNNNNNNNNNNGGNNNNNNGGGGG
CCCNNNGGGGGGGGCCCCCGGGNNNGGGGNCCCCCCGGGGGGGCGGGGGG
GGGGCCCCCGGGGGGGGGGGGGGGCCCCCCGGGGGGGNCCGGGGGGGGGG
GGGGGCCCCCGGGGGGGGGCCGGGGGGCCCCCCCCGGGTTTGGCGGCCCC
CCGGGGGGGGGCGTAAGCGNNNNNNNNNNNNNNNNGGGGGGAGCGGGGTT
TTTTTTTGGNNGGGCGGGGNGGGGGGGGGGGGGGGGGCCCCCCCCTTGGC
NCCCCCCTTGNGNNGNNNGGTGNNGAGAGGGGTTGNGNNNGNGGTAANNN
NNNNNGTAGGNGGGGGTAGNNGNGGTAGTNNNNNGTATNNNNNNNNTTAN
NNNNNNNNNNNNTTANTNNNNNNNNNNTTNNNNTTNTNNNGATATNTTTT
TNTNNTNNNNNTTTATTTTNNTTTTNTTTNTNTTTTATATNNNNNNNTNT
TTTATTTTTTNTNNNNNNNNTTTNTNNNNNNNNGTTGGNNNNNNNNNNNN
TTAGNNNNNGTAANNNNNNNNNNNNNNGNGNTTGNNNNNNNNGGTGGTAN
GNNNNNNNNNTGNNNNNNNNNTANTTGTGTCNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTANNNNNNNNNNNNNTANNNNNNNNNNNNNNNNNNNNNNT
AGNNNGNNNGNNGNGNNNGNNNNGGNNGGGGGGGGGGGGGGGGGGGNGGG
GGNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTAGGGN
NGGGNGNNNNNGNGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGG
GGGGGNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGG
GGGGGGNGGGGGGGGGGGGGGGGNNGGNGGGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_l14.b1 MSMg01no106_l14.b1 CHROMAT_FILE:
MSMg01no106_l14.b1 PHD_FILE: MSMg01no106_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:34 2005
         (559 letters)



>mm_chr9_17544940_17545892
          Length = 953

 Score =  930 bits (481), Expect = 0.0
 Identities = 512/525 (97%), Gaps = 6/525 (1%)
 Strand = Plus / Plus

                                                                       
Query: 35  tcctttcctaaatatcctcacatgaaatttgttctatatcatccttaattcagattctca 94
           ||||||||||||||||||||||||||||||||     |||||||||||||||||||||||
Sbjct: 235 tcctttcctaaatatcctcacatgaaatttgt-----atcatccttaattcagattctca 289

                                                                       
Query: 95  atttgttttctttgtcttcagcacgtctgcgataacatgccttggagcattggggtttgt 154
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 290 atttgttttctttctcttcagcacgtctgcgataacatgccttggagcattgggctttgt 349

                                                                       
Query: 155 atttgctgttgtttcctgaatttcttttggatacctcacttctttgatattgcatcatca 214
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 acttgctgttgtttcctgaatttcttttggatacctcacttctttgatattgcatcatca 409

                                                                       
Query: 215 gagttctttttctcaatgtttctttgaatcttttatactgatcttttcttctagattttc 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gagttctttttctcaatgtttctttgaatcttttatactgatcttttcttctagattttc 469

                                                                       
Query: 275 taatttattagtttgaaaatgtgccagtatagtttccagtatgttcttcctttctacatt 334
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 470 taatttattagtttgaaaatgtgccagtatagtttccagtattttcttcctttctacatt 529

                                                                       
Query: 335 aagttgaactgtcttcaaactcagatacttggtgatatttttcatttttcaatttcaata 394
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 aagttgaactgtcttcaaactcagatacttggtgatatttttcatttttcaatttcaata 589

                                                                       
Query: 395 ggattgatttttatacattccaaatatttcctgaaattttcttccatgtttttcactttg 454
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ggattgatttttatacgttccaaatatttcctgaaattttcttccatgtttttcactttg 649

                                                                       
Query: 455 ttttgtaaatgaattacaatttcacacaatcattttctttgctacatatttagaaactct 514
           |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 650 ttttgtaaatgaattacaatttcacacaatcattctctttgctacatatt-agaaactct 708

                                                        
Query: 515 taccacaaaactatagtatacattaaaaagacattgtttttcatc 559
           ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 709 taccacagaactatagtatacattaaaaagacattgtttttcatc 753


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 953
Length adjustment: 10
Effective length of query: 549
Effective length of database: 943
Effective search space:   517707
Effective search space used:   517707
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)