Query= MSMg01no107_l21.b1 MSMg01no107_l21.b1 CHROMAT_FILE:
MSMg01no107_l21.b1 PHD_FILE: MSMg01no107_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:02 2005
(550 letters)
>mm_chr9_36815959_36816908
Length = 950
Score = 917 bits (474), Expect = 0.0
Identities = 533/558 (95%), Gaps = 10/558 (1%)
Strand = Plus / Plus
Query: 1 gccacaccgctcctctgtctcaagtctaacatcccttccccatattgatagtcctttgga 60
||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 195 gccacactgctcctctgtctcaagtctaacatccatcccccatattgatagtcctttggg 254
Query: 61 tggg--------cctaccctgggcccatacccttagtgatatggttctcatctccatgtg 112
|| ||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 255 tg--tttctcaccctaccctgggcccatacccttagtgatacggttttcatctccatgta 312
Query: 113 gaaggcctctctccctaccacactcattgtgttttgtgctagactatggtgagctatgcc 172
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gaaggccactctccctaccacactcattgtgttttgtgctagactatggtgagctatgcc 372
Query: 173 ctgtgttgaggtgttccctccataggaggacaagctccttggggtgaaagggttcttttt 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ctgtgttgaggtgttccctccataggaggacaagctccttggggtgaaagggttcttttt 432
Query: 233 gcctactattagcctgtataacagaggttagatggcagccaaaacagccttaaactggct 292
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gcctactattagcctatataacagaggttagatggcagccaaaacagccttaaactggct 492
Query: 293 gttctagcatgctagctccgggtagacccttcttcgctaggtctttgtagagagtaaaat 352
|||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 493 gttccagcatgctagctccgggtagacccaacatcgctaggtctttgtagagagtaaaat 552
Query: 353 gaataccacagcatttccccaatgcccttcaggctcatggtcttatgatttctatcaaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gaataccacagcatttccccaatgcccttcaggctcatggtcttatgatttctatcaaga 612
Query: 413 aatgttgttgaaaagtacctcctcccatatattctgtcttcatttctgggtctttattaa 472
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 613 aatgttgttgaaaagtacctcctcccatatagtctgtcttcatttctgggtctttattaa 672
Query: 473 tgtcttctttgtttgttttcatttctgaggcagcatctcatatagtataggctggctttg 532
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tgtcttctttgtttgtttacatttctgaggcagcatctcatatagtataggctggctttg 732
Query: 533 aactgactatgtagctga 550
||||||||||||||||||
Sbjct: 733 aactgactatgtagctga 750
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no107_l21.g1 MSMg01no107_l21.g1 CHROMAT_FILE:
MSMg01no107_l21.g1 PHD_FILE: MSMg01no107_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:02 2005
(443 letters)
>mm_chr9_36907090_36907932
Length = 843
Score = 760 bits (393), Expect = 0.0
Identities = 430/443 (97%), Gaps = 2/443 (0%)
Strand = Plus / Minus
Query: 1 cagacttgtgtccccactattctggacatccctaaaaactgagtagcacatgactttctt 60
||||||||||||||||||||||| ||||||| ||| |||||| |||||||||||||||||
Sbjct: 529 cagacttgtgtccccactattcttgacatccttaagaactgaatagcacatgactttctt 470
Query: 61 tttgacccccgtgggactgactagggaaagcctgtctttggaagcttgattgaatcagtg 120
||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 469 tttgaccccggtgggaccgactagggaaagcctgtctttggaagcttgattgtatcagcg 410
Query: 121 aagaccccctccctcttccctctgctgtcccttcagagcttgattggctggtctgagttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 aagaccccctccctcttccctctgctgtcccttcagagcttgattggctggtctgagttg 350
Query: 181 tgggcaacagggaagcattgctaataaatgaggcatcctctactgaccacatggagagat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tgggcaacagggaagcattgctaataaatgaggcatcctctactgaccacatggagagat 290
Query: 241 cacatggggtatgttcaggcctggctgactgggatatatgagagggaggaaggaatggac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 cacatggggtatgttcaggcctggctgactgggatatatgagagggaggaaggaatggac 230
Query: 301 tatgggaggtttttttctctcctctccaaacatacacacacacacattcacatacataca 360
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 229 tatgggaggtttttttctctcccctccaaacacacacacacacacattcacatacataca 170
Query: 361 tatacatacacccattcacacatatacacaagtacacatatacacatacacacatatata 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 169 tatacatacacccattcacacata--cacaagtacacatatacacatacacacatataca 112
Query: 421 gtactcagacttgcacacatgca 443
|||||||||||||||||||||||
Sbjct: 111 gtactcagacttgcacacatgca 89
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
