BAC Information

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BAC

Clone NameMSMg01-108H02
Chromosome9 (Build37)
Map Location 31,752,111 - 31,752,354
singlet/doubletsinglet
Overlap genenone
Upstream geneAdamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558, EG666576, Barx2, LOC100042266
Downstream geneTpi-rs4, LOC666619, LOC666622, Grit, Kcnj5, Kcnj1, Fli1, LOC669759, LOC100041398, Ets1, LOC100041426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108H02.T7 (MSMg01no108_h02.b1)MSMg01-108H02.TJ (MSMg01no108_h02.g1)
ACCAG321891AG321892
length711706
length of high quality
(start - end)
201 (79 - 279)244 (85 - 328)
definitionCHROMAT_FILE: MSMg01no108_h02.b1 PHD_FILE: MSMg01no108_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:18 2005CHROMAT_FILE: MSMg01no108_h02.g1 PHD_FILE: MSMg01no108_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAAATTTGCGGCGCTAACGACTCCTATTCAAGAGGACCGCGGAATTCAT
GCCTGTACTGGAAACCTAGACAACAAACTATTGCTGAAGAATCTCAGACC
CCAGAGGAGGACCTACTACTGACATTATCCTAAGCCAATATGCTTTCTAA
TCATCATCTACACGTCTATCCTTATACCTACAAATAATTGTAGCTCTTAC
CCCTCCTCAAAGCAGATTTTTTTCCAGCAAACAGAGGCTACTATGGAGAT
CTACAACTGGTTACAATGAAAAGAATAAGTGGTCATGGGAGCCTATACCC
AACTGGCACATCTATAACATACCTCCCACACGGAAAGCTCAGAGCATAAT
ATGAAGGAACGGGCAGAGATTGCCAGAGCCAGAGGACCATGTGAGGGCTG
CTCGATAGTATCCTCTAGATAAGATAATGATAGTATTGCCTAAACAAGAC
CAGCTTAACAGGACCCCAGGTGACACGTCAGTGTTCCTACAGGCCTGGAT
GAATGTCTGTATGCCATCCCATGGTTTGCTAATAAAGGATGTAACAATCT
TCGATAACTGCAGACAATTTTGACGAAGCACCTATAGGTATGAGTAACTC
TGTCATAACTATGTACCCTTCAATGGTCCACCCCCAACCCCAGACTTCCC
TATAATAGTGGTAAATCGGAGTTTAGTAGAATTGTATTGTCGAAAGACAA
ACTGTGTATTG
TTCTCCTCGATGCAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAATTCTCATCTAAA
AGCTTGGAAAGAATGGGACAATTTACGCCAAGTTCTGAGAGTCAATTACT
GCCAACCCAGGTTACTATATCCTGAAGAATTATTTGTCATAGTTTATGGA
GGAACAAAAATTGTCCAGAATAAACATAAGCTAGATAAACCAAAGAAATG
CATGGCCACCAACACTGCAGAAGATACCTGAAGGGATTTTATGCCCTTCA
GAGAAAGAGGAACACATCTATAAGGACAGATGAAAGATAAAGCTGTTAAG
ATGGCAGTTAGTAAACGACGGTTAGGAAAACAACGAACACTATGAAATAT
AACTATGGTCGAAATTAATATATATTTTTCAGTAACAACTCACCTGCTAC
ACGTTTCCCTTCCTCAATCATAACATAGACTATCAGGTTGCACATACCAA
TTAACTAATTAATAACCAATCTCCAGATCTATCTATTCCTGCAACTCTCA
GTACCTAACACGCCCCACGATGCCGCCTCTATCACTTTTCTATTGCCGTG
CTAAAAAACTATGATCAAGGTAATGTATAAAAGATCGTGTTTAATTACTC
TCACAGTCTCATAGCTCTACAGCCCATGATGCCCTCCCAAATGCATTGTC
GTCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_h02.g1 MSMg01no108_h02.g1 CHROMAT_FILE:
MSMg01no108_h02.g1 PHD_FILE: MSMg01no108_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:18 2005
         (244 letters)



>mm_chr9_31751771_31752414
          Length = 644

 Score =  441 bits (228), Expect = e-128
 Identities = 240/244 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaattctcatctaaaagcttggaaagaatgggacaatttacgccaagttctgagagtca 60
           ||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||
Sbjct: 584 agaattctcatctaaaagctcagaaagaatgggacaatttaagccaagttctgagagtca 525

                                                                       
Query: 61  attactgccaacccaggttactatatcctgaagaattatttgtcatagtttatggaggaa 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 attactgcccacccaggttactatatcctgaagaattatttgtcatagtttatggaggaa 465

                                                                       
Query: 121 caaaaattgtccagaataaacataagctagataaaccaaagaaatgcatggccaccaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 caaaaattgtccagaataaacataagctagataaaccaaagaaatgcatggccaccaaca 405

                                                                       
Query: 181 ctgcagaagatacctgaagggattttatgcccttcagagaaagaggaacacatctataag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ctgcagaagatacctgaagggattttatgcccttcagagaaagaggaacacatctataag 345

               
Query: 241 gaca 244
           ||||
Sbjct: 344 gaca 341


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)