BAC Information

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BAC

Clone NameMSMg01-109D20
Chromosome9 (Build37)
Map Location 74,730,470 - 74,730,809
singlet/doubletsinglet
Overlap geneOnecut1
Upstream geneUnc13c, Wdr72, Nr1h2-ps, LOC100040764
Downstream geneBC031353, Arpp19, LOC100040812, Myo5a, LOC677501, Myo5c, Gnb5, Bcl2l10, LOC384954, Mapk6, Leo1, EG666190, LOC100042070, Tmod3, Tmod2, Lysmd2, Scg3, LOC100042107, Bmp5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109D20.T7 (MSMg01no109_d20.b1)MSMg01-109D20.TJ (MSMg01no109_d20.g1)
ACCAG322475AG322476
length744732
length of high quality
(start - end)
152 (54 - 205)339 (82 - 420)
definitionCHROMAT_FILE: MSMg01no109_d20.b1 PHD_FILE: MSMg01no109_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:23 2005CHROMAT_FILE: MSMg01no109_d20.g1 PHD_FILE: MSMg01no109_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCCCCCCCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCACTATGTATTCACAGGTGACCTTCTACTCCTGCTGCC
ACTCCAGGCAGAGAAAGAACAAGTGTATACCACTAATGCATTATTATTAT
TATTATTATTATTACTATTATTATTATTATTATTATTATTATTATTTTGA
TTTTACTCTGTTCCTTGCGACAGTCCTGCTAAGTAGCCTCACCAGACCTA
GCCCTAGCTACTCACCCCATGTTTGCCTCCTACTGGCGGCCATCCTCCTA
CCCCAGACTCCCACATTCCGGGACCCCAGCCCCTGCTATGGCTCCCGTGC
TCTTATCTTCCCCAAGTGCCCATTTCTCCCTGCCCCGCCCCCCCTTCATC
TTAGTTGAACTCTCGCGCTCCCTGACCCCCCCCTTTGTTTACTCGCCCCC
CCCCTTCTCCTTCCCCCTTTCCCTTGCTCGCCTTTTACCCCTCTTTACCC
CGCTTCCCCTCCTTCCCCGGTTGTTTGTTTTAACCCCGCTTCCCTGTCTT
TCCCTTCTTTCCGATTCCCCATCGCTCCCTTCTTCCTCTTCCCCCCCCCC
CCCTTTTCCCGTTCCTCCCCCTTTCCCCCTTCGTTTCCCCTTCCCCTCCC
CCCCTTTCCCTATCCCCCTTTCTCTTTTTCCCTTTCCCTTTCCTGTTTCC
CCCCCCCCCCCTTTCTCCTTTTCCCCCCCCCCTTTCCTTCCCCG
TTTNNNTTACGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTATGGAAAGAAGGCA
GAAATGGCATTCTGGGGGTGGGGTAGAGGAAATAGCTTATTAGGTAAAGC
ATGAATGTGCTTGGTGCATTGAGGTGCAACTGAGTAGTGTGGTAGGAGTG
GTGGGCAGTCAGGAGAAAGATGCAGGCTGTTTGAAGTCATAGTACCAAGA
TCCTTGAGGCAGAACAGGCACTGAGCTCTCTTCTTGGGCTTCAGGATACC
CCTATGGGGTTCATTTGCAGTGTTGACTATTGGCATGTTATGGAAATGTA
TAGTATGGTTATACAGACATTTTTTTTTACAAACCCAAACGAGGCAAGCT
CCACTTGTTTGAAATTAGCTATAGGAAACTAGTTTCATTTCTATTTTTGT
GTGTGCACACGTGTACATGACTGTGCACATCCATGATATACTCAGAGGAA
GACATCAGGTGTCCCTGTCTATCACTCTTTATTCCCTTGAGACAGTCTCT
CGCTGAACCTGGAGCTAGACTGGCTACCAGTAAGCCCCAGCAATTCCCCA
GACTCCATGGCATTGGTTCACAGGTCTTATCATCCCTGCCCACCTTTTGA
TGTGAGTGCTGGCTATTCCAACTCACGCCCCTACGTCTGTAAAAACAAAA
TTCTTACCCCGCCTGAGTCTTCTCCTGCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_d20.g1 MSMg01no109_d20.g1 CHROMAT_FILE:
MSMg01no109_d20.g1 PHD_FILE: MSMg01no109_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:23 2005
         (339 letters)



>mm_chr9_74730270_74731009
          Length = 740

 Score =  538 bits (278), Expect = e-157
 Identities = 325/344 (94%), Gaps = 9/344 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtatggaaagaaggcagaaatggcattctgggggtggggta----gaggaaatagct 56
           |||||||||||||||| |||||||||||||  ||||| |||| |    ||||||||||||
Sbjct: 201 tttgtatggaaagaagacagaaatggcatt--gggggggggggacggggaggaaatagct 258

                                                                       
Query: 57  tattaggtaaagcatgaatgtgcttggtgcattgaggtgcaactgagtagtgtggtagga 116
           ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 259 tattaggtaaagcatgaatgtgcttagtgcattgaggtgcaactgagcagtgtggtagga 318

                                                                       
Query: 117 gtggtgggcagtcaggagaaagatgcaggctgtttgaagtcatagtaccaagatccttga 176
           |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 319 gtggtgggcagtcaggagaaaggtgcaagctgtttgaagtcatagtaccaagatccttga 378

                                                                       
Query: 177 ggcagaacaggcactgagctctcttcttgggcttcaggatacccctatggggttcatttg 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 379 ggcagaacaggcactgagctctcttcttgggcttcaggatacccctatggggttcatttt 438

                                                                       
Query: 237 -cagtgttgactattggcatgttatggaaatgtatagtatggttatacagacattttttt 295
            ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tcagtgttgactattgacatgttatggaaatgtatagtatggttatacagacattttttt 498

                                                       
Query: 296 ttacaaacccaaacgaggcaagctccacttgtttgaaattagct 339
             | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 --agaaacccaaacgaggcaagctccacttgtttgaaattagct 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 740
Length adjustment: 9
Effective length of query: 330
Effective length of database: 731
Effective search space:   241230
Effective search space used:   241230
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)