Query= MSMg01no110_c11.b1 MSMg01no110_c11.b1 CHROMAT_FILE:
MSMg01no110_c11.b1 PHD_FILE: MSMg01no110_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:38 2005
(606 letters)
>mm_chr9_72455660_72456663
Length = 1004
Score = 1091 bits (564), Expect = 0.0
Identities = 592/602 (98%), Gaps = 3/602 (0%)
Strand = Plus / Plus
Query: 5 gaattctctggaactacagttacggtgtctgtaaacctcaaagtgtgggtgccaggaacc 64
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctctgaaactagagttacggtgtctgtaaacctcaaagtgtgggtgccaggaacc 265
Query: 65 aaatccaggttctctataaaagttgcaaatgcttttaagcactgagccatttttttcagc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 266 aaatccaggttctctataaaagttgcaaatgcttttaagcactgagccatttttt-cagc 324
Query: 125 cccttttatcacctggttattatccaatcatctttgctttaacagtaaaagtggagaaag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cccttttatcacctggttattatccaatcatctttgctttaacagtaaaagtggagaaag 384
Query: 185 atgttagcttatcttgtttccctcctgtaattcaaaaacatgggaatctccctggttaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgttagcttatcttgtttccctcctgtaattcaaaaacatgggaatctccctggttaaa 444
Query: 245 aaataattataatgttaataatacacttttaaaatgttcttgtcttataatgaaagactg 304
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 445 aaataattataatgttaataatacacttaaaaaatgttcttgtcttataatgaaagactg 504
Query: 305 gtgttaacttttttttttttttttgcaaccattaaagcaggacatagaaaataatagaaa 364
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 505 gtgttaactttttttttttttt--gcaaccattaaagcaggacatagaaaagaatagaaa 562
Query: 365 aggccctttttgtatcagagaaataatatataagaaaacagaaggggatgaaaattaaga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aggccctttttgtatcagagaaataatatataagaaaacagaaggggatgaaaattaaga 622
Query: 425 atttattacagattgacccaagtgtccaccacaggctggcccatgtggctggaagaagga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 atttattacagattgacccaagtgtccaccacaggctggcccatgtggctggaagaagga 682
Query: 485 cactcaagcacctgccctggccacaatggtgttggatggccagaagaaagacacccagta 544
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 683 cactcaagcacctgccctggccacaatggtgttggatggccagaagatagacacccagta 742
Query: 545 cctgcctctggccccaccacagtggaagaatgtgtgatggagagatggaagagaaagtga 604
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 cctgcctctggccctaccacagtggaagaatgtgtgatggagagatggaagagaaagtga 802
Query: 605 gg 606
||
Sbjct: 803 gg 804
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1004
Length adjustment: 10
Effective length of query: 596
Effective length of database: 994
Effective search space: 592424
Effective search space used: 592424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no110_c11.g1 MSMg01no110_c11.g1 CHROMAT_FILE:
MSMg01no110_c11.g1 PHD_FILE: MSMg01no110_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:38 2005
(619 letters)
>mm_chr9_72538755_72539774
Length = 1020
Score = 1160 bits (600), Expect = 0.0
Identities = 615/620 (99%), Gaps = 1/620 (0%)
Strand = Plus / Minus
Query: 1 caattttctaacagtatttttaaccagttaaccataacagactggaatctgttaggtttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 caattttctaacagtatttttaaccagttaaccataacagactggaatctgttaggtttt 656
Query: 61 gttcgactgaaatggacattacccttgcttagcccgttatgcctttagagacttcaggaa 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 655 gttcgactgaaatggacattacccttgcttagcccgttatgcctttacagacttcaggaa 596
Query: 121 acactgccgtgtattacgctgcttctgtatgggagcaaagtcctaatctggtttcttctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 acactgccgtgtattacgctgcttctgtatgggagcaaagtcctaatctggtttcttctt 536
Query: 181 ctaacttttttttggattaagttaggtgtttgccatattcaataggtcacttgtagtcag 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 535 ctaacttttttttggattaagttaggcgtttgccatattcaataggtcacttgtagtcag 476
Query: 241 acaatcagtaccggctaagtacacaggccttggaataaaacttagtgagaaaaagctctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 acaatcagtaccggctaagtacacaggccttggaataaaacttagtgagaaaaagctctg 416
Query: 301 attattaatataaaacaatgctgaatatctgacatgttttctcctcaacaaacagctttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 attattaatataaaacaatgctgaatatctgacatgttttctcctcaacaaacagctttt 356
Query: 361 cggtaagatttaatcttccagagtgtgaggaacacaagcaggcttttttttcc-tttttc 419
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 355 cggtaagatttaatcttccagagtgtgaggaacacaagcaggctttttttcccctttttc 296
Query: 420 ccttcttctgattctactgaacataaagcaaggaccaaggaccaagcttggatttgtttg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ccttcttctgattctactgaacataaagcaaggaccaaggaccaagcttggatttgtttg 236
Query: 480 tgtgtttgctttgatttttaaagttgactcacaggtgaagatgaaactcagttgataaag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 tgtgtttgctttgatttttaaagttgactcacaggtgaagatgaaactcagttgataaag 176
Query: 540 tgcttacctcacattcacaaggtcctggataacacacccagcaccctataaacatggtat 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 tgcttacctcacattcacaaggtcctggataacacacccagcaccctataaacatggtat 116
Query: 600 ggggtgacacacctctaatc 619
||||| ||||||||||||||
Sbjct: 115 ggggtaacacacctctaatc 96
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1020
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1010
Effective search space: 615090
Effective search space used: 615090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
