BAC Information

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BAC

Clone NameMSMg01-110F08
Chromosome9 (Build37)
Map Location 45,418,632 - 45,573,238
singlet/doubletdoublet
Overlap geneDscaml1
Upstream geneDdx6, LOC667406, LOC100042660, Treh, Phldb1, Arcn1, 1500035H01Rik, Tmem25, BC021608, Mll1, Atp5l, Ube4a, Cd3g, Cd3d, Cd3e, Eva1, A530065I17Rik, Amica1, Scn2b, Scn4b, Tmprss4, Il10ra, Tmprss13, Fxyd6, Fxyd2
Downstream geneCep164, LOC640094, Bace1, Rnf214, Pcsk7, Tagln, Sidt2, Pafah1b2, 2610005M20Rik, BC033915, Apoa1, Apoc3, Apoa4, Apoa5, Zfp259, Bud13, 4931429L15Rik, LOC100042722, EG667890
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110F08.T7 (MSMg01no110_f08.b1)MSMg01-110F08.TJ (MSMg01no110_f08.g1)
ACCAG323286AG323287
length712707
length of high quality
(start - end)		508 (44 - 551)539 (74 - 612)
definitionCHROMAT_FILE: MSMg01no110_f08.b1 PHD_FILE: MSMg01no110_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:53 2005CHROMAT_FILE: MSMg01no110_f08.g1 PHD_FILE: MSMg01no110_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,572,929 - 45,573,238)(45,418,632 - 45,419,170)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAGGACAGCTGAGCTACTCAGAGAAACCATGTCTCAAAAAGCAAAAA
CAAAAAAAGAACTACCAAAGGCATTGTCTTCCTACCTCAGAGGTCTGGAC
GGAATGTGATCCGCCCACTTCAAACACACCTCACAGGCCCTTTATCTCTG
GATTCCATTTAACTCCAGATTTAGTCAAATTGACAACCAAGAATAACCAT
CACACCTACCAAATACTACAAGCTAGGAATCTAAACAGCCCAAGTTATCC
TCACAAGCTCCAAGTTCCAGCAGCTTCTGTTTCTGGTGAGGGACTTTCTG
GTTCATACGTGGTTCTCTCTAGCTGTGCTTTCCTGGTGGGAGGGTGAAGG
GCAGTCCCTTGGGCTCCTCTGAGGCCCTTGTCCCATTCACGCCAATCACT
TTCCGAAGGTCCCACCTCTAACCGAATCATCCGCATACATGTTGAGGAAT
AGACATGTATTATTTGGAGTTGAGACTTTATGCTGCCCACTCCTGCTTTA
CAGTAGAAGAAACGTTTACATTTATTTATTTATTTATTTATCCATTTATT
TATTTATTAATTACGCCCGCGAACATCCTAAATACTGATTTGTAGGATTT
CTCCTCCTATGGCGTGCCACCTGTTCATTTACAGGTACCAGCCATCTTGT
TTCCCTTCTTAG

TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTAATCACTGAAAGGAAACTGGGGTT
GAGCTGTGCATTACGGTGCTAATTCTGTAATCCCACTGCATTAATGTTAT
TAAATGTCACTGAGTGATTGCTTTCCCAGTGTTTAAATTCTTAATGCACT
TATCCTTTCAAAACTTTGGGCACCAATGTCAAAAAAGAAGAATCAGTGAA
CACCCTGTTGTAAAATCGGGTAGTCGGGAGCCTTTCTCAAAGCTTGGAGA
TCTTTCAAGCATCTTAAAGGTAGGCAGCTCAGCCTTGTGCTGAGACAACT
ACAGCCAGACTGTGTGTTCTGCCTCATTGCGTCTCCACCATGCCGTAATG
GGAGCTGGCTCCATCCTGCCTTGAGATACAAAATGCTTCCGTGCCTTCCT
CTGCTCTCTTCCAGACTTTTCTCTTCGACCCATCTGAACCCTGAAATTAT
ATCAACAAAGGCAAATAAACATTTGGACATAATGCTGGAGGTTTATGAAA
CAAGATGAGTTTGCATCAGCCTTTGGTACAGGCAATGGCAAAAGGCCAGA
ATCCCCCAGTGTCAAGAACTCAAAATAAAGAATATAAGCTTACTGGTATC
TAGATCTGGGTCATGCCTCTGAACAGCAGTCATCCCCTAAGTCACCTAAG
ATACCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_f08.b1 MSMg01no110_f08.b1 CHROMAT_FILE:
MSMg01no110_f08.b1 PHD_FILE: MSMg01no110_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:53 2005
         (508 letters)



>mm_chr9_45572331_45573238
          Length = 908

 Score =  545 bits (282), Expect = e-159
 Identities = 303/310 (97%)
 Strand = Plus / Minus

                                                                       
Query: 199 aataaccatcacacctaccaaatactacaagctaggaatctaaacagcccaagttatcct 258
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 908 aataaccatcacacctaccaaatactacaagctaggattctaaacagcccaagttatcct 849

                                                                       
Query: 259 cacaagctccaagttccagcagcttctgtttctggtgagggactttctggttcatacgtg 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 cacaagctccaagttccagcagcttctgtttctggtgagggactttctggttcatacgtg 789

                                                                       
Query: 319 gttctctctagctgtgctttcctggtgggagggtgaagggcagtcccttgggctcctctg 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 gttctctctagctgtgctttcctggtgggagggtgaagggcagtcccttgggctcctctg 729

                                                                       
Query: 379 aggcccttgtcccattcacgccaatcactttccgaaggtcccacctctaaccgaatcatc 438
           ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 728 aggcccttgtcccattcacaccaatcactttccgaaggtcccacctctaacagaatcatc 669

                                                                       
Query: 439 cgcatacatgttgaggaatagacatgtattatttggagttgagactttatgctgcccact 498
           |||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 668 cgcacacatgttgaggagtagacctgtattatttggagttgagactttatgctgcccact 609

                     
Query: 499 cctgctttac 508
           |||| |||||
Sbjct: 608 cctgttttac 599


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no110_f08.g1 MSMg01no110_f08.g1 CHROMAT_FILE:
MSMg01no110_f08.g1 PHD_FILE: MSMg01no110_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:53 2005
         (539 letters)



>mm_chr9_45418432_45419370
          Length = 939

 Score = 1035 bits (535), Expect = 0.0
 Identities = 538/539 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctaatcactgaaaggaaactggggttgagctgtgcattacggtgctaattctgtaatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctaatcactgaaaggaaactggggttgagctgtgcattacggtgctaattctgtaatcc 260

                                                                       
Query: 61  cactgcattaatgttattaaatgtcactgagtgattgctttcccagtgtttaaattctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cactgcattaatgttattaaatgtcactgagtgattgctttcccagtgtttaaattctta 320

                                                                       
Query: 121 atgcacttatcctttcaaaactttgggcaccaatgtcaaaaaagaagaatcagtgaacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgcacttatcctttcaaaactttgggcaccaatgtcaaaaaagaagaatcagtgaacac 380

                                                                       
Query: 181 cctgttgtaaaatcgggtagtcgggagcctttctcaaagcttggagatctttcaagcatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgttgtaaaatcgggtagtcgggagcctttctcaaagcttggagatctttcaagcatc 440

                                                                       
Query: 241 ttaaaggtaggcagctcagccttgtgctgagacaactacagccagactgtgtgttctgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaaaggtaggcagctcagccttgtgctgagacaactacagccagactgtgtgttctgcc 500

                                                                       
Query: 301 tcattgcgtctccaccatgccgtaatgggagctggctccatcctgccttgagatacaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcattgcgtctccaccatgccgtaatgggagctggctccatcctgccttgagatacaaaa 560

                                                                       
Query: 361 tgcttccgtgccttcctctgctctcttccagacttttctcttcgacccatctgaaccctg 420
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 tgcttccgtgccttcctctgctctcttccagacttttctctccgacccatctgaaccctg 620

                                                                       
Query: 421 aaattatatcaacaaaggcaaataaacatttggacataatgctggaggtttatgaaacaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaattatatcaacaaaggcaaataaacatttggacataatgctggaggtttatgaaacaa 680

                                                                      
Query: 481 gatgagtttgcatcagcctttggtacaggcaatggcaaaaggccagaatcccccagtgt 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gatgagtttgcatcagcctttggtacaggcaatggcaaaaggccagaatcccccagtgt 739


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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