AAGGGCAGNGAGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCATCCATAATCACTATTGTACAACCATTACTAC
TGCCCATTCCAGAGCTTTCAATCATTCCAAACTGAAACTGTGTATCTTTT
AAGATAACTCAGACTCCTGAGTACATACCCAAAAGAATTTAAGTACACTA
CAGAGATTCTGGCAACATCCTTGCCTATAAGTGCACTACTCACAATAGCC
AAAGTATGAAATCAGCCAAGATGAGCATCAACAGAAGAACAGGTAAAAAC
ATGTGCTATATATACACACTTGAGTTTTATTCAGGAATAAAGAAAAACAG
GAATTTGCAGTTAATGAATGAACCCAGACTCAGAGAGATAAACATATATG
TTATCTCTCATTTGTGGAATCTATCTCTAAATCTTTAGATATGAGAGTAT
AGCTTAGAGTCACTGAAGAAACCTGTCCAGTAGAAGGAGACCAAGGCAAG
TAGAGAGAAAGGAGCTCTTGAGAGGGACAATGGGACATGGGTGTTAAAAA
GAGAGAAACAAAAAAGAAGAAATTTAGCAGTGAAAAGGAGGCTGGGATAG
AGGAAAAGAGAACAGATACAAAACACCAAGGATGTTTGAGAAAGCCATAG
GCAGCTGAAGAGATGGCTCAGTGGTTAAGAGTACTTACTGCATAGAGCTT
AGGTCACATTCCTAACACCCTCACAGAAGAGGTAG

ACTCATANNNTAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTATCAGCTTT
TCCGCCAGCTCCTTTACCTAGTTGGGTGTCTTCTTCACATTGCTCAAAGT
GGGTGAGCTGTTGCCTTCCATGTGCCTGTTCTTTTTGCTGACTGCAGGTT
TAGGGCCTGTGTGGGTGTGGCTGGCTATAAGCACACTGGTTGTCCATGAG
CACCCGGAACAGGTCCAACTGTTGATTTTGTCGGAAATCTCATGCCCTGA
TAGACGCCACTTATTTTCCCCCATCTTTGGCAAAGACAGTTTTATAACAT
GAGAAGGATTTGCACTATAAAGTTCTTCCAGCCACGCCCTAAATTCTCTA
TGCTTGAGATAAGCTCGGCTCATCTCACCTTTGATTTTAGTTTACAAGAA
TCTCTTTTCCCCATTTATTGAACAAATATATTGTAGAACGCCTACCTGCT
ACCACTATTTCACCCCCTTTCTGCCTGCTCTGCTGGCCCATTTCCAAAGA
GCCCTATGATGAACCCAAATTGTATCCCTAGTGTCTGCCCATCTATGCCT
TCCTTATTAAATCCTCGTATATCCCTCCCTCGTTTTAATGTCTTTCCCTG
CCCCTTCTTGCGCACACCATTTACAAACCATATCAAATTTTCTCTGTTTC
CCCCCTCTTTCTCTCTGCCACCCCCCATTTACCCCCC

Query= MSMg01no110_k12.b1 MSMg01no110_k12.b1 CHROMAT_FILE:
MSMg01no110_k12.b1 PHD_FILE: MSMg01no110_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:19 2005
         (632 letters)



>mm_chr9_32976360_32977391
          Length = 1032

 Score =  882 bits (456), Expect = 0.0
 Identities = 480/488 (98%)
 Strand = Plus / Minus

                                                                        
Query: 145  gagattctggcaacatccttgcctataagtgcactactcacaatagccaaagtatgaaat 204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 gagattctggcaacatccttgcctataagtgcactactcacaatagccaaagtatgaaat 973

                                                                        
Query: 205  cagccaagatgagcatcaacagaagaacaggtaaaaacatgtgctatatatacacacttg 264
            ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 972  cagccaagatgagcatcaacagaagaataggtaaaaacatgtgctatatatacacaattg 913

                                                                        
Query: 265  agttttattcaggaataaagaaaaacaggaatttgcagttaatgaatgaacccagactca 324
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912  agctttattcaggaataaagaaaaacaggaatttgcagttaatgaatgaacccagactca 853

                                                                        
Query: 325  gagagataaacatatatgttatctctcatttgtggaatctatctctaaatctttagatat 384
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 852  gagagataaacatatatgttatctctcatttgtggagtctatctctaaatctttagatat 793

                                                                        
Query: 385  gagagtatagcttagagtcactgaagaaacctgtccagtagaaggagaccaaggcaagta 444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792  gagagtatagcttagagtcactgaagaaacctgtccagtagaaggagaccaaggcaagta 733

                                                                        
Query: 445  gagagaaaggagctcttgagagggacaatgggacatgggtgttaaaaagagagaaacaaa 504
            |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 732  gagagaaaggagctctcgagagggacaatgggacatgggtgttaaaaagaaagaaataaa 673

                                                                        
Query: 505  aaagaagaaatttagcagtgaaaaggaggctgggatagaggaaaagagaacagatacaaa 564
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672  aaagaagaaatttagcagtgaaaaggaggctgggatagaggaaaagagaacagatacaaa 613

                                                                        
Query: 565  acaccaaggatgtttgagaaagccataggcagctgaagagatggctcagtggttaagagt 624
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 612  acaccaaggatgtttgagaaagccatagccagctgaagagatggctcagtggttaagagt 553

                    
Query: 625  acttactg 632
            ||||||||
Sbjct: 552  acttactg 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no110_k12.g1 MSMg01no110_k12.g1 CHROMAT_FILE:
MSMg01no110_k12.g1 PHD_FILE: MSMg01no110_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:19 2005
         (379 letters)



>mm_chr9_32777951_32778729
          Length = 779

 Score =  663 bits (343), Expect = 0.0
 Identities = 370/379 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatcagcttttccgccagctcctttacctagttgggtgtcttcttcacattgctcaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttatcagcttttccgccagctcctttacctagttgggtgtcttcttcacattgctcaaag 260

                                                                       
Query: 61  tgggtgagctgttgccttccatgtgcctgttctttttgctgactgcaggtttagggcctg 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 tgggtgagctgttgccttccatgtgcctgttcttcttgctgactgcaggtttagggcctg 320

                                                                       
Query: 121 tgtgggtgtggctggctataagcacactggttgtccatgagcacccggaacaggtccaac 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 tgtgggtgtggctggttataagcacactggttgtccatgagcacccggaacgggtccaac 380

                                                                       
Query: 181 tgttgattttgtcggaaatctcatgccctgatagacgccacttattttcccccatctttg 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 tgttgattttgtcggaaatctcatgccttgatagacgccacttattttcccccatctttg 440

                                                                       
Query: 241 gcaaagacagttttataacatgagaaggatttgcactataaagttcttccagccacgccc 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaaagacagttttataacgtgagaaggatttgcactataaagttcttccagccacgccc 500

                                                                       
Query: 301 taaattctctatgcttgagataagctcggctcatctcacctttgattttagtttacaaga 360
           |||| |||||||||||||||||||||||||||||||||  ||||||||||||||| ||||
Sbjct: 501 taaactctctatgcttgagataagctcggctcatctcagttttgattttagtttagaaga 560

                              
Query: 361 atctcttttccccatttat 379
           |||||||||||||||||||
Sbjct: 561 atctcttttccccatttat 579


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)