Query= MSMg01no111_b22.b1 MSMg01no111_b22.b1 CHROMAT_FILE:
MSMg01no111_b22.b1 PHD_FILE: MSMg01no111_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:01 2005
(733 letters)
>mm_chr9_123019491_123020623
Length = 1133
Score = 1350 bits (698), Expect = 0.0
Identities = 725/734 (98%), Gaps = 2/734 (0%)
Strand = Plus / Plus
Query: 1 ttgaaacgaaatctgtggcctagggatataactccatgacagaatattttcccaggactc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgaaacgaaatctgtggcctagggatataactccatgacagaatattttcccaggactc 260
Query: 61 acgagcctccagcaccagcatcaaaaattgatggaatgaaactgagcagtattttacagg 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgagcctccagcaccagcatcaaaaattgatggaatgaaactgagcagtattttacagg 320
Query: 121 atagttaccagcctcataacaaacatgggtgttctgcattaggtcccctggtagatgaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagttaccagcctcataacaaacatgggtgttctgcattaggtcccctggtagatgaca 380
Query: 181 tggagtttgtgagaggctacagaaagtgacatttgggagccacaaagcctccactcaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggagtttgtgagaggctacagaaagtgacatttgggagccacaaagcctccactcaaat 440
Query: 241 cctgcctctgctacatattagttatgtgctctgtgactttgctcagacacttatgct-tt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 cctgcctctgctacatattagttatgtgctctgtgactttgctcagacacttatgctatt 500
Query: 300 ctgtgcctgtttcctaaactgtaaaattgccctcataaggctattctgagaattgaatct 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 -tgtgcctgtttcctaaactgtaaaattgccctcataaggctattctgagaattgaatct 559
Query: 360 ttgtaaagttcttggcatacaataagcatcacacagtgtcatagaaagttaatagagcct 419
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttgtaaagttcttggcatacaacaagcatcacacagtgtcatagaaagttaatagagcct 619
Query: 420 gggttttataaaagacacaacaacaaaacagcatgaaacaaacaaaaaccccaagagaaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gggttttataaaagacacaacaacaaaacagcatgaaacaaacaaaaaccccaagagaaa 679
Query: 480 tgaaaaagcaaactggtataacacaatataatgtgccatccttgggtatttcatttttct 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgaaaaagcaaactggtataacacaatataatgtgccatccttgggtatttcatttttct 739
Query: 540 ggttctaatatgttctttgaatagcttcaataaataagaactatgagttgtgaggtttaa 599
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 740 ggttctaatatgttctttgaatagcttcaataaataagaactatgagttatgaggtttaa 799
Query: 600 agacatctaatgcattcaatgaatatgatgaaaatgctctagcagcacataggaaaaata 659
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 800 ggacatctaatgcattcaatgaatatgatgaaaatgctctagcatcacataggaaaaata 859
Query: 660 actagtgatggcagctgtgttccagcagagaatataaactccactgtttatgtttcttga 719
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 actagtgatgacagcagtgttccagcagagaatataaactccactgtttatgtttcttga 919
Query: 720 agtcttctgaacct 733
||||||||||||||
Sbjct: 920 agtcttctgaacct 933
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 733
Length of database: 1133
Length adjustment: 10
Effective length of query: 723
Effective length of database: 1123
Effective search space: 811929
Effective search space used: 811929
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no111_b22.g1 MSMg01no111_b22.g1 CHROMAT_FILE:
MSMg01no111_b22.g1 PHD_FILE: MSMg01no111_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:02 2005
(765 letters)
>mm_chr9_123177264_123178428
Length = 1165
Score = 1189 bits (615), Expect = 0.0
Identities = 654/669 (97%), Gaps = 4/669 (0%)
Strand = Plus / Minus
Query: 1 cagctgggcgtgacggcgcacacctttgatcccctcactcggaaggcagaggcaggcaga 60
|||||||| |||| || |||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 665 cagctgggtgtgatggtgcacgcctttgatcccagcactcggaaggcagaggcaggcaga 606
Query: 61 tttctgagttcgaggccggcctggtctacaaagtgagttccaggacacccaaggctacac 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tttctgagttcgaggccagcctggtctacaaagtgagttccaggacacccaaggctacac 546
Query: 121 agagaaaccctgtcttgaaaaaccaaaaaaaaaaaaaaaaaaaagaagaagaattcagac 180
||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 545 agagaaaccctgtctcgaaaaaccaaaaaaaaaaaaaaaaa----aagaataattcagac 490
Query: 181 aatgggacttctggtatcccttacaaacttatgaccacaagatccaagtttgtctgacca 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 aatggaacttctggtatcccttacaaacttatgaccacaagatccaagtttgtctgacca 430
Query: 241 gcagagatggcaccgtgtggccaggagggcaacttcttgtatgccaggaactgtccctct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gcagagatggcaccgtgtggccaggagggcaacttcttgtatgccaggaactgtccctct 370
Query: 301 ttactatccatgtgcaataatggtctcaacaagtagccctggctagcctttgtcttagtt 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ctactatccatgtgcaataatggtctcaacaagtagccctggctagcctttgtcttagtt 310
Query: 361 agggttttattgctgtgaacagacaccgtgaccaaggcaactctcatttaattgggactg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 agggttttattgctgtgaacagacaccgtgaccaaggcaactctcatttaattgggactg 250
Query: 421 gctcagaggttcagtccattatcctcaaggcaggaagatggcagcctccaggcaggcata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gctcagaggttcagtccattatcctcaaggcaggaagatggcagcctccaggcaggcata 190
Query: 481 gtacaggaggcactgagagttctacatcttcatctgaaggctgctagcagaatactgact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 gtacaggaggcactgagagttctacatcttcatctgaaggctgctagcagaatactgact 130
Query: 541 tcaaggcacttaaaactagggtcttaaagcccatgcccacagtggcacccctactccaac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tcaaggcacttaaaactagggtcttaaagcccatgcccacagtggcacccctactccaac 70
Query: 601 aaagccatacctcctaatagtgccactccctgggccaagcacattcaaaccatcacagcc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaagccatacctcctaatagtgccactccctgggccaagcacattcaaaccatcacagcc 10
Query: 661 ttgaacttg 669
|||||||||
Sbjct: 9 ttgaacttg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 765
Length of database: 1165
Length adjustment: 10
Effective length of query: 755
Effective length of database: 1155
Effective search space: 872025
Effective search space used: 872025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
