BAC Information

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BAC

Clone NameMSMg01-111E19
Chromosome9 (Build37)
Map Location 82,947,404 - 82,948,157
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039085, Irak1bp1, Phip
Downstream geneLOC100039144, Hmgn3, LOC100039159, 4930431B11Rik, EG619900, LOC100039186, LOC100039200, Sh3bgrl2, LOC100039222, Elovl4, Ttk, EG546150, Bckdhb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111E19.T7 (MSMg01no111_e19.b1)MSMg01-111E19.TJ (MSMg01no111_e19.g1)
ACCAG324007AG324008
length1,1701,168
length of high quality
(start - end)		783 (37 - 819)697 (86 - 782)
definitionCHROMAT_FILE: MSMg01no111_e19.b1 PHD_FILE: MSMg01no111_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:15:26 2005CHROMAT_FILE: MSMg01no111_e19.g1 PHD_FILE: MSMg01no111_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:15:26 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
GATTCTNNNNNNATCATTCGCGCTAACACTCCTAAGGGAGAGGATCCGCG
GAATTCCCAAAGAAGGCTTTTTCTTGTAATCTGCAGCCGTGTTCGTTCGT
GCTTTTGCATACCTTATTTTTATCATGTTTAGGTGGTTTCCTTCTCTTCA
TATTCTTTGTAGAGTTATTATAATAAGAATTCCTGTTGAATTCAACTGAA
AGCCTTTTAGCATCCACTGAGATATTACTTCAAATAACAAAAGTATATAA
TTGAAAGGCCTCTGATATGAACTGAATTTAGATCTTGGCGATGAAGGTCA
TTACTGATACCCTACTGGACTTTGGTTTTAGCTATTTATTAAGAATTTTA
CATTATATTTTGATAAGTGAAATTTAACTATTGCTTTATTTCCCTGTTAT
TATCTAACCCTAATGTTAACCTTTTTGATGATTTTGTAACATATTAGTGA
GATGGACATCGTTTGTATGACTTCAGATAGCTTAAATCATTGTTAAATAA
GCATTGAATTTATTTATTTTTCAATAATCTTACATGGAGCAGAGGCATTT
ACATTGTTTACACAATAAAAGATATAATCAGATTTTTTTTTTTACAATTT
AGAATACACATATTCCAGAAAGTTTATAGCCAATGTAGAAACAAAAAATG
GGTATGTGAACCAAAGTAAACCAAACTAAATGCAAATTAATTTCCCAGAA
ATGCTGGCCCATGGTGCATATACTTCCACCCATTCCCCTTAGTATACTTC
TTACTCTATTCTCCCATCTGTCATTAGTGGTTTTTCGTTTTCAAAAACAT
CTTAGCCAATGTGGCTGTGAGACTCCTCATTCGTATATGCCAACAAAATC
TTAATTCTTTGTTCCCCTCCTCCCGATAGATTGAGATGGGTTTTTTTTTA
TTATTTTATTTTATTCTATGTGTATGTGAATGGATGTTTTGTCTACATAT
ATATCTCTGTGGGTGAATGCCTACAGAGGGTTAAAGTTACAGATGGTTTG
TGAGCTGAATATGTGGGTACCGGGAGTTTGAACTCTAGGCCCTTTGGGAA
AAAGCAACCAGGGTCCCTAAATCTTTGAAACCATTTTCCTCTATCCCCTG
AAAATAANTTTTTTTTTTAAGAATAGCTTTTTTTTTATAACACCTTCTCA
GGGGAGAAGCCTCTTCTTTT

CATCTTTTNNNNNAAGATGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTTTATACCCTAGATAAACAGGCTG
TTGGTGTTTGCTAAACGTTCATATGTCAGATTGTGGATGAATTTAATCCA
GCAGCATGGCTGTTCTCAACAAATCCAAACCCCATCTAGTCTGTATGACC
CAAATGGAATAGAGACATGCCCCTTAGTACACACCCTTAATTCCTCTGGC
TGGAATCCTTTAGTACATACCTTTAATCCCAAACAATGATATCTAATTGA
GGGGAAGACAAAGTGATGGATCAGAGAAAGATTTGACAGAATTGGTCAGA
TATACCCAACTCTAGGGAGAAAAGCCGTTTTAGAGCAGGTAGGTAGGGAC
AGGGAGTCGGTTCAGTTAAGTGGAGTGGAGCTCGGGGAGGTAGTTGGGAG
TGAGTGCAGAAAGTATAGTGCGGTGCAGCTGAGTTCATCTGTTAGTTTAT
GCAGGTCAGCAGAGGCCACTGAAGCCAGAGAATAAGTAGCCAGAGGATTA
GAACACATTGCTAGAGTTAGGGTGAGGCCAAGCAGAGCAATTCAGGAGAA
GCTGAGAGAAGCCAGATTGAATCAGTCAGCATGGAGAGGAGTTTAAGCCA
GAGAGCTGAGTTGACCAGCCAGCCAGAGTTCAGAAAGAACTAGAAAGGGT
GATCTTATTCAGCAGTATGCCTCAGAGATGGCAATTCCATAAGACAGATT
AATAGTGACTTGTACAGTATGCTCATGATATATGTGCAAGTGCCTTGGTC
AGAGAACAATTCTGCAGAGTCACTTTTCTCCTGTCAGCTCAGGGGTTCCA
CGTAAGGTTTCAAGGCCCATGTGTAATCACGTCTATCAGCTGAACCACCT
CAATACCCAGTTTCATCCCAACTGTACAAGGAGGCACTAACATACAGGTG
TCTTGATCCCACCAATAATCAGATATTGCCCTCCAGTTCTGAGCAATTTC
TTCTGGCCCGCGCATTCAAGCATTACTAAATTTTATGTATTACATACTAC
CACTCCTTAAATTGGACCCCTCCAAAAGGAAAAAGGGCACGTTTCTAATA
AAAAAAAAAACTTTAACTGGTAAAAAAGGACTTTCTATTTTCTTTAAAAT
TTTTCCAGTTAATTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_e19.b1 MSMg01no111_e19.b1 CHROMAT_FILE:
MSMg01no111_e19.b1 PHD_FILE: MSMg01no111_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:26 2005
         (783 letters)



>mm_chr9_82947319_82948497
          Length = 1179

 Score = 1243 bits (643), Expect = 0.0
 Identities = 733/775 (94%), Gaps = 26/775 (3%)
 Strand = Plus / Minus

                                                                       
Query: 14  ggaattcccaaagaaggctttttct---tgtaatctgcagccgtgttcgttcgtgctttt 70
           ||||||||||||||||||||||  |   || |||||||||||||||| ||||||||||||
Sbjct: 839 ggaattcccaaagaaggctttt--taaatggaatctgcagccgtgtttgttcgtgctttt 782

                                                                       
Query: 71  gcataccttatttttatcatgtttaggtggtttccttctcttcatattctttgtagagtt 130
           |||||  | |||||||||||||||||||||||||||||   |||||||||||||||||||
Sbjct: 781 gcataagtgatttttatcatgtttaggtggtttccttc---tcatattctttgtagagtt 725

                                                                       
Query: 131 attataataagaattcctgttgaattcaactgaaagccttttagcatccactgagatatt 190
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 attataataagaatttctgttgaattcaactgaaagccttttagcatccactgagatatt 665

                                                                       
Query: 191 acttcaaataacaaaagtatataattgaaaggcctctgatatgaactgaatttagatctt 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 acttcaaataacaaaagtatataattgaaaggcctctgatatgaactgaatttagatctt 605

                                                                       
Query: 251 ggcgatgaaggtcattactgataccctactggactttggttttagctatttattaagaat 310
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 604 ggcgatgaaggtcattactgataccctactggactttggttttagctgtttattaagaat 545

                                                                       
Query: 311 tttacattatattttgataagtgaaatttaactattgctttatttccctgttattatcta 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tttacattatattttgataagtgaaatttaactattgctttatttccctgttattatcta 485

                                                                       
Query: 371 accctaatgttaacctttttgatgattttgtaacatattagtgagatggacatcgtttgt 430
           |||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 484 accctagtgttaacctttttgatgattttgtaacatattagtgagatagacatcatttgt 425

                                                                       
Query: 431 atgacttcagatagcttaaatcattgttaaataagcattgaatttatttatttttcaata 490
           |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 424 atgacttcagatagcttaaatcattgttaaataagcattggattt-tttatttttcaata 366

                                                                       
Query: 491 atcttacatggagcagaggcatttacattgtttacacaataaaagatataatcagatttt 550
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 atcttacatggagcagaggtatttacattgtttacacaataaaagatataatcagatttt 306

                                                                       
Query: 551 tttttttacaatttagaatacacatattccagaaagtttatagccaatgtagaaacaaaa 610
           |||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 305 tttttttacaatttagaacacatatattccagaaaatttatagccaatgtagaaacaaaa 246

                                                                       
Query: 611 aatgggtatgtgaaccaaagtaaaccaaactaaatg--caaattaatttcccagaaatgc 668
           | ||||||||||||||||||||||||||||||| ||  ||             |||||||
Sbjct: 245 a-tgggtatgtgaaccaaagtaaaccaaactaa-tgggca-------------gaaatgc 201

                                                                       
Query: 669 tggcccatggtgcatatacttccacccattccccttagtatacttcttactctattctcc 728
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tggcccatggtgcatatacctccacccattccccttagtatacttcttactctattctcc 141

                                                                  
Query: 729 catctgtcattagtggtttttcgttttcaaaaacatcttagccaatgtggctgtg 783
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 catctgtcattagtggtttttcgttttcaaaaacatcttagccaatgtggctgtg 86


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 783
Length of database: 1179
Length adjustment: 10
Effective length of query: 773
Effective length of database: 1169
Effective search space:   903637
Effective search space used:   903637
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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