Query= MSMg01no111_f08.b1 MSMg01no111_f08.b1 CHROMAT_FILE:
MSMg01no111_f08.b1 PHD_FILE: MSMg01no111_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:31 2005
(631 letters)
>mm_chr9_111896138_111897168
Length = 1031
Score = 1147 bits (593), Expect = 0.0
Identities = 620/629 (98%)
Strand = Plus / Minus
Query: 1 ggctttgtggatcattcagactttctctgcgtacacacagggaagaactggctgtaatga 60
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 632 ggctttgtggatcattcagactttctctgtggacacacagggaagaactggctgtaatga 573
Query: 61 attcagtaaatgacacaagccagggagagacacaccaccctgacgaccttctccaccctt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 572 attcagtaaatgacacaagccagggagagacacaccaccctgacgaccttcttcaccctt 513
Query: 121 gtggcatcgggcaaagtcactgctgcctccctgtctgtcttggcagctgctgctgtgaat 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gtggcatcgggcaaagtcagtgctgcctccctgtctgtcttggcagctgctgctgtgaat 453
Query: 181 tcacactggtaatccctgacagggtttatttcatgctgataaggaagggaaagagaaact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tcacactggtaatccctgacagggtttatttcatgctgataaggaagggaaagagaaact 393
Query: 241 atgtacatgtcacctgatccctccatggtctagctctccagacaaaagtctagggatgac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 atgtacatgtcacctgatccctccatggtctagctctccagacaaaagtctagggatgac 333
Query: 301 tgaagtagatgccactgctttcagcataccagggggggagggggaaggcctagggggagg 360
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 332 tgaagtagatgccactgctttcagcataccagagggggagggggaaggccaagggggagg 273
Query: 361 ggaaagcatgtctctgcggaggagagtggacacggagcactttagactcttctgagaggt 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 272 ggaaagcatgtctctgcggaggagagtggacacggagcactttagattcttctgaaaggt 213
Query: 421 ttataaaataacgggaagttgagctgaatctataaagtgcttactgcacaaggaccacga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 ttataaaataacgggaagttgagctgaatctataaagtgcttactgcacaaggaccacga 153
Query: 481 tttaagtgcttgtacagaacctatatgaaatgcccagaagctgtaattccagagctgagg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 tttaagtgcttgtacagaacctatatgaaatgcccagaagctgtaattccagagctgagg 93
Query: 541 agccagagacagaaggctccgtgacacagggccagtcagcctagcctaacaggtgagcct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 agccagagacagaaggctccgtgacacagggccagtcagcctagcctaacaggtgagcct 33
Query: 601 acgtggcagtggagaggaggtgagagaca 629
||||||||||| |||||||||||||||||
Sbjct: 32 acgtggcagtgaagaggaggtgagagaca 4
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no111_f08.g1 MSMg01no111_f08.g1 CHROMAT_FILE:
MSMg01no111_f08.g1 PHD_FILE: MSMg01no111_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:31 2005
(681 letters)
>mm_chr9_111757049_111758130
Length = 1082
Score = 1133 bits (586), Expect = 0.0
Identities = 658/682 (96%), Gaps = 3/682 (0%)
Strand = Plus / Plus
Query: 1 tagtctggctggccagctctgtcttagccttccctgtttctaccttccttggaattacag 60
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 201 tagtctggctggccagctctgtcttaggatcccctgtttctaccttccttggaattacag 260
Query: 61 ggagaatggggattccctacccacttgatgtttgtatgtgtgctggggatctaaactctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagaatggggattccctacccacttgatgtttgtatgtgtgctggggatctaaactctg 320
Query: 121 gtgctcacacatgtgtggcaaagtactttactcactgagccatctctatcaatcatgtgg 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgctcacacatgtgtggcaaagcactttactcactgagccatctctatcaatcatgtgg 380
Query: 181 caagagtgtccccaaaacagacacacacacaaatcacaataaatggtaaactaaaaaaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagagtgtccccaaaacagacacacacacaaatcacaataaatggtaaactaaaaaaca 440
Query: 241 aaaggtctgtgtttgaattaaaatttgaatctgtaattgtctttggaatagcctgtgaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaggtctgtgtttgaattaaaatttgaatctgtaattgtctttggaatagcctgtgaag 500
Query: 301 acataaactactactggtttgcacagatcgctctgagcatattgtgggcttttcagtatg 360
|||||||||||||| || ||||||||||||||||||||||||||||||||| || |||||
Sbjct: 501 acataaactactacagggttgcacagatcgctctgagcatattgtgggcttctcggtatg 560
Query: 361 ctgaatgcttagggagctcccagtgaccccaatttactgctatttttgctgatcgcttga 420
|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 ctgaatgcagagggagctcccagtgaccccaatttactgctattttcgctgatcgcttga 620
Query: 421 catttccaagaatcgtgttaattaaccttcctgtagccagagagtttagcagggctgcac 480
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catttccaagaatagtgttaattaaccttcctgtagccagagagtttagcagggctgcac 680
Query: 481 attctccacagtgcttctgctaggtggcacgctggcactacctgatgctgcgatgcttag 540
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 681 attttccacagtgcttctgctaggtggcacgctggcactagctgatgctgcgatgcttag 740
Query: 541 ttat-tgttgcata-cgggctaagtgggaggcagggaggcctgtgaatttgtgctcctgc 598
|||| | ||||||| |||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 741 ttatat-ttgcatagcgggctaagtgggaggcagggaggtctgtgaatttgtgttcctgt 799
Query: 599 gccgagggacactcaggtgggaatgggtagaatctgggagtatctgtcaggagcatcaag 658
| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 gttgaggaacattcaggtgggaatgggtagaatctgggagtatctgtcaggagcatcaag 859
Query: 659 gcacactgctctgaaactgaat 680
||||||||||||||||||||||
Sbjct: 860 gcacactgctctgaaactgaat 881
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1082
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1072
Effective search space: 719312
Effective search space used: 719312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
