BAC Information

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BAC

Clone NameMSMg01-111G11
Chromosome9 (Build37)
Map Location 75,601,929 - 75,602,488
singlet/doubletsinglet
Overlap genenone
Upstream geneOnecut1, BC031353, Arpp19, LOC100040812, Myo5a, LOC677501, Myo5c, Gnb5, Bcl2l10, LOC384954, Mapk6, Leo1, EG666190, LOC100042070, Tmod3, Tmod2, Lysmd2, Scg3, LOC100042107
Downstream geneBmp5, EG620071, Hmgcll1, Gfral, Hcrtr2, C530008M07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111G11.T7 (MSMg01no111_g11.b1)MSMg01-111G11.TJ (MSMg01no111_g11.g1)
ACCAG324081AG324082
length1,1871,215
length of high quality
(start - end)
556 (113 - 668)644 (78 - 721)
definitionCHROMAT_FILE: MSMg01no111_g11.b1 PHD_FILE: MSMg01no111_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:15:41 2005CHROMAT_FILE: MSMg01no111_g11.g1 PHD_FILE: MSMg01no111_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:15:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTGGCATTGGGCCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCT
CAGTTCCTCCAGCCCCATTTAAGCTTGGATGCTGCCATGTTCCTGCCTTG
ATGACCCTGTACTGAACCTCTGAACCTGTAAGTCAGCCCCAATTAAATGT
TGTCCTTTATTATGAGTTGCCTTGGTCGTGGTATCTGTGGAGAGCAGTAA
AACCCTAACTAACACACACACACTGATGCCTAACTGCAATGTATTGGCCA
TTCCCATGAGTAGCAAGATCCTCAGTCTTCCCATGTATGACAGTATCCCT
GGGTACATCTTACATACACACATATGCAGTTATTATGGAAGCCACTATTC
AGCACTTGACAGGTGACTAGTGTGACCTGAGTGTGTGTTGAGCATGAAAC
ACAACACCAAATTTCAAAGACAGCATAAAAATAAACTTAAAAAAAAAAAA
CCACCCAGTAGTTCATTAATGTTTGGTAACACGTTGGAATGCTAATATGT
TGGGTATGTAGAGTTAAAAGAATACCTTATTAATTACACTGATTCTGCTT
AAAACACAGTAGGAAAACTTTAAATTGCATATGTGTTCCACTCTGGGAGT
GGACTTATTATTTCTGACTACTCTGATCTGTGGTAAGTCCAACTTGAAGA
GTTTGAATCCAGCATGGAAAGGGTGGAGGAACCGGAATGTTCTCAGGATG
GAGGAGGAGAAAGGCAAGCAGCCTGGACTCTGTTCTGTTCTGTTCTGTTC
TGTTCTGTTCTGTTCTTGTTCTGTTCTGTTCTGTTTGTTCTGTTTTCTGC
AACCACCCGTCTGCATTCACCAGATTTGTCAAAACTGAAGTGTTCAAGGT
GGTAAACTAAAGTTGTGTGTATGGATTTGTTCACTGGAAGACTTCCTGGT
TTTCATCTGTGAGTCTCTTACGTTTTTGACATGTGAAAAGGTCACCCGTT
CAAACTTTGGTAATGCAATGGTAAATATTTCGTAAGCTTGTTTAATCTTA
GGTTTACCTACTAAAAATGCGGGACCCCAAGTTTTTTCAAATTTTTCGGT
TTTTCCCACTAAAATTTTAAAATTTTTGTGGAATATGCTTTTTGTAATTA
TTCTCCCTGTTCCATAAGTTAATATTAAAGTTTTTTGGGTGTGAAAAATT
ACCTCCTAAATATTATTTCTTGGAATTGCATCTCAAA
GTTTTTGACGACGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCTTTAGGGAAAGAGATGCAGAGAGAGAAGAA
GCAGGATCACCTCGATGGGGAAGCAGACATCAGACTTAAGAGCCCTTGGA
CAAGTAAGAATCCAGGAAAGCGGCCCCAGGGGCCACTCCCCCAATTGGGT
CTGGGGTAGCGGAGATGAAATACAGATTTAGCAAGCATCAATTCAAGAAT
AGCAAAGGGGAGTCCAGGAGTGACCCAGTCATGGAGCTAGTATGGCATAT
TAAAAATTACACAGCTTGTGTGTGTCTTTTCATTCGCGAATCCAGAGAAC
TCTGGTGCGTAATGTGATCATCCACCGGGAGCTCGGAGCAGTTTAATAAT
TTACCGCTACAGTCATGCTTGCTTGGAATCCTAGGATTTTCTACATTGAA
ATAGGGGAGACATGACAATCATTGGCCCTTTCTGGCAACCATCATAGCCC
CAAAGACAATGAGCTCCAGACTCAATTGAGAGATAATTATTTCAAAGAGT
AAGGTGGAAAGGGCTGGATACATGATGGTCTCTTCTAGCCTACACACATG
CTCACAGACAACCACACACATGTTTGTATATAAATGAACACATTGCTAAA
TATTTATTATATATGCAGGGCATGGTGGTACATGCCTAGAATCCTAATAC
ATGAGACACTGAAGCAGAAGAGGGAATCATAGACATTGTGGGCTGCATAG
TGAGTTTGCATGACTCATCTGCAAATGCAAATGACTCATGCCAAACAAAA
GACTTGGGATTTTTAATGGACAGTATTGTCTTATTCCCTAGATAGTTGTT
AAACCCAACCAATTATGTTCCAATAAGGAAATAATATCAGAAAATTGATA
TGTGTGAACCACTTGCTGAATAGTCTTTCAAAAGGGTTATTAATTTTGGA
ACAATTACTACCCAAGACTAGACTTACTTAAGGATTTTAGAATAAAACGA
ATACGAAACTCCCAGGTTGGACAATTCTTACCTGCCATCCCCAAATCTCG
GAAAACTCCCATACAAGTTCTGGGCTTTCTTGGCAGGCTTGGTTTTTTGT
TCACTGGCTATTATTAATTCTTCCGATTTATACCATAACCCAAATCCCTC
TGGTTTTTAATTCCATAGGCCTGGCCCTCATATGGTTATAAAAGGTTAAT
AAAGATTCTTCGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_g11.b1 MSMg01no111_g11.b1 CHROMAT_FILE:
MSMg01no111_g11.b1 PHD_FILE: MSMg01no111_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:41 2005
         (556 letters)



>mm_chr9_75601729_75602684
          Length = 956

 Score =  994 bits (514), Expect = 0.0
 Identities = 547/560 (97%), Gaps = 4/560 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaacctctgaacctgtaagtcagccccaattaaatgttgtcctttattatgagttgcct 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaacctctgaacctgtaagccagccccaattaaatgttgtcctttattatgagttgcct 260

                                                                       
Query: 61  tggtcgtggtatctgtggagagcagtaaaaccctaactaacacacacacactgatgccta 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 tggtcgtggtatctgtggagagcagtaaaaccctaactaacacacacacattgatgccta 320

                                                                       
Query: 121 actgcaatgtattggccattcccatgagtagcaagatcctcagtcttcccatgtatgaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgcaatgtattggccattcccatgagtagcaagatcctcagtcttcccatgtatgaca 380

                                                                       
Query: 181 gtatccctgggtacatcttacatacacacatatgcagttattatggaagccactattcag 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtacccctgggtacatcttacatacacacatatgcagttattatggaagccactattcag 440

                                                                       
Query: 241 cacttgacaggtgactagtgtgacctgagtgtgtgttgagcatgaaacacaacaccaaat 300
           ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 441 cacttgacaggtgactagtgtgacctgagcgtgcgttgagcatgaaacacaacaccaaat 500

                                                                       
Query: 301 ttcaaagacagcataaaaataaacttaaaaaaaaaaaaccacccagtagttcattaatgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcaaagacagcataaaaataaacttaaaaaaaaaaaaccacccagtagttcattaatgt 560

                                                                       
Query: 361 ttggtaacacgttggaatgctaatatgttgggtatgtagagttaaaagaataccttatta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttggtaacacgttggaatgctaatatgttgggtatgtagagttaaaagaataccttatta 620

                                                                       
Query: 421 attacactgattctgcttaaaacacagtaggaaaactttaaattgcatatgtgttccact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attacactgattctgcttaaaacacagtaggaaaactttaaattgcatatgtgttccact 680

                                                                       
Query: 481 ctgggagtggacttattatttctgac----tactctgatctgtggtaagtccaacttgaa 536
           ||||||||||||||||||||||||||    |||||||||||||||||| ||| |||||||
Sbjct: 681 ctgggagtggacttattatttctgacagaatactctgatctgtggtaaatccgacttgaa 740

                               
Query: 537 gagtttgaatccagcatgga 556
           ||| ||||||| ||||||||
Sbjct: 741 gagcttgaatctagcatgga 760


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)