Query= MSMg01no111_j15.b1 MSMg01no111_j15.b1 CHROMAT_FILE:
MSMg01no111_j15.b1 PHD_FILE: MSMg01no111_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:08 2005
(749 letters)
>mm_chr9_72604612_72605758
Length = 1147
Score = 1309 bits (677), Expect = 0.0
Identities = 730/755 (96%), Gaps = 14/755 (1%)
Strand = Plus / Plus
Query: 1 tcagaaaggggaagaaaagaagttacaaccctaaggaaaaaaaaaaaaagattcccagcc 60
||||||||||||||||||||||||| || || |||||||||||| |||||||||||
Sbjct: 201 tcagaaaggggaagaaaagaagttataagccaaaggaaaaaaaa-----gattcccagcc 255
Query: 61 ccagatatacccatagtcaactattgttccagagcgggttacttagaaaagagacttttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ccagatatacccatagtcaactattgttccagagcgggttacttagaaaagagacttttg 315
Query: 121 ctctgagttggaaaagagcccccaaggcctgtggaagccatactgtagcctgcccactct 180
|||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||
Sbjct: 316 ctctgagttggaaaagagcccccaaggcctatgggagccatactgtagcctgtccactct 375
Query: 181 gtcttggcgccagaagccagtcttgggccaggagagacagctaagacagagattgaggtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gtcttggcgccagaagccagtcttgggccaggagagacagctaagacagagattgaggtc 435
Query: 241 tccagtgtgttctccacacaatacaagccactagactgcgtcatctgcttgagatctccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tccagtgtgttctccacacaatacaagccactagactgcgtcatctgcttgagatctccc 495
Query: 301 ttagggcttctgcagaggagaagtatttcacaattcgacaccacaaaatgctcctgaata 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ttagggcttctgc---ggagaagtatttcacaattcgacaccacaaaatgctcctgaata 552
Query: 361 ttgaattacccaaaagatgcttagtcttcgggtgcacagagccaatgggctggcaccata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ttgaattacccaaaagatgcttagtcttcgggtgcacagagccaatgggctggcaccata 612
Query: 421 aaggacaactctaaatgtgaggtttgaaatgatgttggttccctaattgaatataaggaa 480
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 aaggacagctctaaatgtgaggtttgaaatgatgttggttccctaattgaatataaggaa 672
Query: 481 tgttgttcttagaggctccagaaactctgccagggtgacaataactactctcctttgact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tgttgttcttagaggctccagaaactctgccagggtgacaataactactctcctttgact 732
Query: 541 cagcctcagcgtgccctgccagctgtgcggggactgcttggtaatggtggaatccaggtc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 cagcctcagcgtgccctgccagctgtgcggggactgcttggtaatggtggaatccaggtc 792
Query: 601 ccttagccctttaagttggccgag------cacacagagacctcatgcatattcctaagt 654
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 793 ccttagccctttaagttggccgagtacatgcacacagagacctcatgcatattcctaagt 852
Query: 655 atgggagtgtggctcagtccccaagtgagtttcaaacccatgatgctcatctctgaggcg 714
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 853 atgggagtgtggctcagtccccgagtgagtttcaaacccatgacgctcatctctgaggcg 912
Query: 715 tctaactgtaggttgttcttcctcgtggtgtgtgc 749
|||||| |||||||||||||||||| |||||||||
Sbjct: 913 tctaaccgtaggttgttcttcctcgaggtgtgtgc 947
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 749
Length of database: 1147
Length adjustment: 10
Effective length of query: 739
Effective length of database: 1137
Effective search space: 840243
Effective search space used: 840243
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no111_j15.g1 MSMg01no111_j15.g1 CHROMAT_FILE:
MSMg01no111_j15.g1 PHD_FILE: MSMg01no111_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:08 2005
(652 letters)
>mm_chr9_72699973_72701024
Length = 1052
Score = 754 bits (390), Expect = 0.0
Identities = 431/450 (95%), Gaps = 12/450 (2%)
Strand = Plus / Minus
Query: 1 ccagggctacaaagtgagaccctgtctc----ccttaaccgccattctccttaagagcat 56
|||||||||||||||||||||||||||| | |||||||||||||||||||| |||
Sbjct: 588 ccagggctacaaagtgagaccctgtctcaaaac---aaccgccattctccttaagatcat 532
Query: 57 cttctaagatcagctgggttcgctatcaaagactcacagcagggtctgtctaactgctga 116
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 531 cttctaagatcagctgggttcgctatcaaagactcacagcagggtctgtctgactgctga 472
Query: 117 cactgtgcccaagaagagcatggggagggtcatacaccctctcacctgagtatctgccca 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 cactgtgcccaagaagagcatggggagggtcatacaccctctcacctgagtatctgccca 412
Query: 177 ggcacggcctgcagggagtgcatgcaactcagccccaactgtgcacatcctcaaggaagg 236
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 411 ggcacggcctgcagggagtgcatgcaactcggccccaactgtgcacatcctcaaggaagg 352
Query: 237 agcgagagtgtagagtgtggcaagagggggaggaggaagagacgtgggcaaggggagagg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 agcgagagtgtagagtgtggcaagagggggaggaggaagagacgtgggcaaggggagagg 292
Query: 297 gagcgccatctatttggctactgaaaagccattatctgtgggataaagactctctgtgtg 356
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 291 gagcgccatctatttggctacagaaaagccattatctgtgggataaagactatctgtgtg 232
Query: 357 ccaggcagtggtggcgcactcttttaatcccagcacttaggaggcagaggcattgga--- 413
||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||
Sbjct: 231 ccaggcagtggtggcgcactcctttaatcccagcacttgggaggcagaggca--ggagga 174
Query: 414 tttctgagttcgaggccagcctggtctact 443
||||||||||||||||||||||||||||||
Sbjct: 173 tttctgagttcgaggccagcctggtctact 144
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space: 668964
Effective search space used: 668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
