BAC Information

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BAC

Clone NameMSMg01-111O10
Chromosome9 (Build37)
Map Location 107,620,511 - 107,621,137
singlet/doubletsinglet
Overlap genenone
Upstream geneRad54l2, LOC100041128, Vprbp, Armet, Dock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f
Downstream geneRbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111O10.T7 (MSMg01no111_o10.b1)MSMg01-111O10.TJ (MSMg01no111_o10.g1)
ACCAG324454AG324455
length1,1271,146
length of high quality
(start - end)		627 (72 - 698)684 (77 - 760)
definitionCHROMAT_FILE: MSMg01no111_o10.b1 PHD_FILE: MSMg01no111_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:48 2005CHROMAT_FILE: MSMg01no111_o10.g1 PHD_FILE: MSMg01no111_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTACATTGGGCGCTATACGACTCCTAAGGGAGAGGATCCGCGGAATTCA
GACCTGGACCCCTCCAATAATGAGGTCCAACCTCTGAAAGAGAAAAGACT
ATGACTTCCTTGAGGGTGCTGGGATATGATATGTTTTTATTTTGATTTAA
TTAAACGTATTTATTTATTTGCTGTAACATCATAAGTTGGCCTCCAGCTC
TCTCTGCAGATGAGGACGACATGGAACTTCTGAGTTTCCCACCTTCACCT
CCCCAGTGCTAGGATTACAGGCATGTGGCTACCAAGTCTGATTTTATGTG
GTACTTGGGATCAAATCCCGGGGCTTCCTTCATCCTAGATAAGCAATCTA
TCAACTGAGCTACACCCCTGGATTTTAAAGTATTTCCCCTGGCTAATGGG
AACCTAAAGAGAGCGTTGTGGTTACTCAGAGAATTGGCCCGGATTTGGCT
GGATCACCGAGATGTTGCCAGATTTTTTTTTTTTTTTCAGAGAAAACCAG
GACTCACTCTGCTTTCTTCTGAATTCTAACCCAACGGGTCTGCCCTGGAT
TTTGAGCTGGAGATACAGGCTATCTACCTGGCCCTTCTACCCTTGGACAC
GGCCAGCTTGGCAGATGTCCCTGCCCTCCTCTCCTTCAAGAGTGATTTAG
ACCTTAATCTGAGGACAAGTTTGTACAGAGCCTTAGCTTGCTGTCAGAGG
AGCAGGGAGCAGCCCAGATGGAGGGATAAGAACGTTGGTGGGGGGAACGT
TTGGGTGTGGGTATAGTTATTTCCTTTTTTCTTTTTTATTCACTTTCTTA
TTTTTTTTTCTTTTTTTTTCTCTATCCTTTTTTTTTTTTTTTTCTTTTTT
ATTTTTTTATCTTTTTTCCTTATCTTTATTTCTTTTCTTTTTCTTATCTT
TTTTCTTTTTTCTTTTATCTTTTTTCTTTCCTTTTTTTTCTTCTTTTCTT
TCCCTCTTCTATTTATTTACTTCCTTTTTTTTTTCTCTTCTCCCTTTTTT
TTTTTTCCTCTTTTTTTTCTTCTTAATTTTTTCTTCCTTTATTTTCTTCT
CTCTTATCTTTTTCTTTCTCTTTCCTCCTCTCATTTTTCTCTTATTCATT
ACTTTTTTATTCTTTATTCTTTTTTTT

NNNNCCCCCAAGTGAGGCTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCACTTTATATGGAATGGGCTCCAACAGCTCAGG
CTCTTTCCCGCTAGTCCTCACAAAGTGTGCTTCTCTGGGTGGCACAGGCT
GGCGCTTCAGCTGCACCCAGGCGCCCTTCTCCTTGGCTTTATTATATTTT
TGTTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGC
GTCAGATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATT
TGAACTTCGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCC
ATCTCACCAGCCCTAGGTTTCTTTTTTAATTAATTTATTTTTAGGTATTT
TCTTCATTTACATTTCAAATGTTATCCCAAAAGTCACCCAGACCCCCCCC
CCCCCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGGGGCATATAAAGT
TTGCAAGACCAAGGGGCCTCTCTTCCTAATGATGGCCGACTAGGCCATCT
TCTGCTACATATGCAGCTAGAGACACGAGCTCCATGGGTACTGGTTAGTT
CATATTGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTTCTTGGGT
ACTTTCTCTAGCTCCTCTATTGGGGGCCTTGTGATCCATCCAATAGCTGA
CTGTGAGCATCCACTTCTGTGTTTGCCCGGCCCCGGCTTTTGTAGGTTTC
TTAAGTAGTTCTGGGTGTCATAGAGCTTGATGTGTAGATCAGGCTCATCT
CTGCTTTTATCACATCAGGCTCTTCTTGCTTTTTGAAAGATTCTTGGCCT
ATTGATCTTGGTGTTGAAGATGTTGAGTCTTCCCATTTCTGTTTCATTTT
GGGAATTTTTTGCCCGAAGTATTTTGTAAAAATTTCTTTTGCTAAAAAAA
TTCCCTTAATTGTTTTTATTCACAATTTTCTACCCTATATGTAAGGGGGG
TGCCTTGCTTTTAAGCTTGTTCTTGTGAAATTTGGGAGGCCCCAAGGGTT
TTTAGAAACTAAAAAACCTTCCCTTTGGGCTTTCTAAAAAAAAATTTTAA
AGTCCTTCTGCCCCGCCCTTTAATGTAAAATTAATCCTTTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_o10.b1 MSMg01no111_o10.b1 CHROMAT_FILE:
MSMg01no111_o10.b1 PHD_FILE: MSMg01no111_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:48 2005
         (627 letters)



>mm_chr9_107620311_107621337
          Length = 1027

 Score = 1189 bits (615), Expect = 0.0
 Identities = 624/627 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaggtccaacctctgaaagagaaaagactatgacttccttgagggtgctgggatatgata 60
           |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 201 gaggtccaacctctgaaagagaaaagactaggactcccttgagggtgctgggatatgata 260

                                                                       
Query: 61  tgtttttattttgatttaattaaacgtatttatttatttgctgtaacatcataagttggc 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtttttattttgatttaattaatcgtatttatttatttgctgtaacatcataagttggc 320

                                                                       
Query: 121 ctccagctctctctgcagatgaggacgacatggaacttctgagtttcccaccttcacctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctccagctctctctgcagatgaggacgacatggaacttctgagtttcccaccttcacctc 380

                                                                       
Query: 181 cccagtgctaggattacaggcatgtggctaccaagtctgattttatgtggtacttgggat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccagtgctaggattacaggcatgtggctaccaagtctgattttatgtggtacttgggat 440

                                                                       
Query: 241 caaatcccggggcttccttcatcctagataagcaatctatcaactgagctacacccctgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaatcccggggcttccttcatcctagataagcaatctatcaactgagctacacccctgg 500

                                                                       
Query: 301 attttaaagtatttcccctggctaatgggaacctaaagagagcgttgtggttactcagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attttaaagtatttcccctggctaatgggaacctaaagagagcgttgtggttactcagag 560

                                                                       
Query: 361 aattggcccggatttggctggatcaccgagatgttgccagatttttttttttttttcaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aattggcccggatttggctggatcaccgagatgttgccagatttttttttttttttcaga 620

                                                                       
Query: 421 gaaaaccaggactcactctgctttcttctgaattctaacccaacgggtctgccctggatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaaaccaggactcactctgctttcttctgaattctaacccaacgggtctgccctggatt 680

                                                                       
Query: 481 ttgagctggagatacaggctatctacctggcccttctacccttggacacggccagcttgg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgagctggagatacaggctatctacctggcccttctacccttggacacggccagcttgg 740

                                                                       
Query: 541 cagatgtccctgccctcctctccttcaagagtgatttagaccttaatctgaggacaagtt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cagatgtccctgccctcctctccttcaagagtgatttagaccttaatctgaggacaagtt 800

                                      
Query: 601 tgtacagagccttagcttgctgtcaga 627
           |||||||||||||||||||||||||||
Sbjct: 801 tgtacagagccttagcttgctgtcaga 827


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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