Query= MSMg01no112_a05.b1 MSMg01no112_a05.b1 CHROMAT_FILE:
MSMg01no112_a05.b1 PHD_FILE: MSMg01no112_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:02 2005
(473 letters)
>mm_chr9_53322412_53323283
Length = 872
Score = 868 bits (449), Expect = 0.0
Identities = 467/473 (98%), Gaps = 1/473 (0%)
Strand = Plus / Plus
Query: 1 agtcttggtctatatagggagttccaagccagatcagagttacacagtgagaccatgtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtcttggtctatatagggagttccaagccagatcagagttacacagtgagaccatgtaa 260
Query: 61 caaaccaaccaaaccaaccaatcaaacaaacaaaaccaacaggcaaaaggaaaaaaaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaaccaaccaaaccaaccaatcaaacaaacaaaaccaacaggcaaaaggaaaaaaaagg 320
Query: 121 aaaaaaacccaaaaaaacagatgctaaatttaatgaaagaaagacattttagtgtcctac 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaaaaccccaaaaaacagatgctaaatttaatgaaagaaagacattttagtgtcctac 380
Query: 181 aatggagtaggtaatcatgaaaaatttggtgcttttttttttcttttaaaagaaaccatg 240
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 381 aatggagtaggtaatcatgaaaaattcggtg-ttttttttttcttttaaaagaaaccatg 439
Query: 241 gttttcaatgtgttcctcataagaagattacaactacttaagaagataatatattaatgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gttttcaatgtgttcctcataagaagattacaactacttaagaagataatatattaatgg 499
Query: 301 tgatttaaacattttacaatgcatgtgtgtatcaaatactatatgtcatatcacaaatat 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 500 tgatttaaacattttacaatgcatgtgtgtatcaaatactagatgtcatatcacaaatat 559
Query: 361 gaaaactttttataaatgttaaatttttaagaaacaattatgtgtctatccttcatgaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gaaaactttttataaatgttaaatttttaagaaacaattatgtgtctatccttcatgaaa 619
Query: 421 atctcccatatcctaaagtgagttaaccttgtatttcagaaatgatccagcac 473
||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 620 atctcccatatcctacagtgagttaaccttgcatttcagaaatgatccagcac 672
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 872
Length adjustment: 10
Effective length of query: 463
Effective length of database: 862
Effective search space: 399106
Effective search space used: 399106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no112_a05.g1 MSMg01no112_a05.g1 CHROMAT_FILE:
MSMg01no112_a05.g1 PHD_FILE: MSMg01no112_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:02 2005
(370 letters)
>mm_chr9_53441286_53442057
Length = 772
Score = 565 bits (292), Expect = e-165
Identities = 337/372 (90%), Gaps = 32/372 (8%)
Strand = Plus / Minus
Query: 1 aggaactc--attttctgtagagcacagcagctctattttttacatttggcttagtcttt 58
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 452 aggaactcagattttctgtagagcacagcagctctattttttacattttgcttagtcttt 393
Query: 59 ttgtattattgtgaactcggattcaaccaggaagcttctcccttcttcattttttccagg 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ttgtattattgtgaactcggattcaaccaggaagcttctcccttcttcattttttccagg 333
Query: 119 gatattttcctgtgttttgaaggttcctgctggttagatttttcttcattctccattctc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gatattttcctgtgttttgaaggttcctgctggttagatttttcttcattctccattctc 273
Query: 179 cctttaagaccagccttgctacactgctgctctccatggctcatcctaagcagagccata 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 cctttaagaccagccttgctacactgctgctctccatggctcatcctaagcagagccata 213
Query: 239 tctgtatataacctctctctctctctctctctctctctctctctctctctctctcatctt 298
|||||||||||| ||||||||||||||||||
Sbjct: 212 tctgtatataac------------------------------ctctctctctctcatctt 183
Query: 299 ctgttttgttttgtttttagacagggtttttttatgtagtcatggctgactggaacttag 358
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 182 ctgttttgttttgtttttagacagggtttttctatgtagccatggctgactggaacttag 123
Query: 359 tctataaacaga 370
||||||||||||
Sbjct: 122 tctataaacaga 111
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 772
Length adjustment: 9
Effective length of query: 361
Effective length of database: 763
Effective search space: 275443
Effective search space used: 275443
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
