Query= MSMg01no112_f15.b1 MSMg01no112_f15.b1 CHROMAT_FILE:
MSMg01no112_f15.b1 PHD_FILE: MSMg01no112_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:29 2005
(500 letters)
>mm_chr9_121097324_121098223
Length = 900
Score = 754 bits (390), Expect = 0.0
Identities = 390/390 (100%)
Strand = Plus / Minus
Query: 111 acaaggccacaattttaccaataaggccacacctcctaaagtgccacttcccatgggcca 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 acaaggccacaattttaccaataaggccacacctcctaaagtgccacttcccatgggcca 841
Query: 171 agcatattcaaaccaccacagtgctggatccatgaaactagagttatagttatgagtcac 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 agcatattcaaaccaccacagtgctggatccatgaaactagagttatagttatgagtcac 781
Query: 231 catgtgggttctgggaatcaaaccagagtgctctgcaggagcagttggtgccttaactat 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 catgtgggttctgggaatcaaaccagagtgctctgcaggagcagttggtgccttaactat 721
Query: 291 cgagacacctctccagcccctttgcctcagtcatgttagcagctggatctttatctcatg 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 cgagacacctctccagcccctttgcctcagtcatgttagcagctggatctttatctcatg 661
Query: 351 cttgttggaaatgtctgagtctatggctttaaaacaagtgacaaagctgcaggtttgtgc 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 cttgttggaaatgtctgagtctatggctttaaaacaagtgacaaagctgcaggtttgtgc 601
Query: 411 cctctctgttgagcagaggtgaggggtgtgtgtaggtgttgagcagagacctgaggtgtg 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 cctctctgttgagcagaggtgaggggtgtgtgtaggtgttgagcagagacctgaggtgtg 541
Query: 471 tgtgggtgttgagcagaggtgtggggtgtg 500
||||||||||||||||||||||||||||||
Sbjct: 540 tgtgggtgttgagcagaggtgtggggtgtg 511
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no112_f15.g1 MSMg01no112_f15.g1 CHROMAT_FILE:
MSMg01no112_f15.g1 PHD_FILE: MSMg01no112_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:29 2005
(247 letters)
>mm_chr9_120983360_120984005
Length = 646
Score = 337 bits (174), Expect = 5e-97
Identities = 239/288 (82%), Gaps = 44/288 (15%)
Strand = Plus / Plus
Query: 1 aaggccagcctaggacacaaatcatgtcaggccagccaagagcacacaatgggatcctga 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 158 aaggccagcctaggacacaaatcatgtcaggccagccaagagtacacaatgggatcctga 217
Query: 61 ctcaaaacaaatcccacaacaaaggaggagctgtggggaggagagactcactctggtcac 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 218 ctcaaaacaaatcccacaacaaaggaggagctgtggggaggagggactcactctggtcac 277
Query: 121 a-------------t------------------------------tttggggggtctggt 137
| | |||||||| ||||||
Sbjct: 278 agcaaaggaggagctgtggggaggagggactcactctggccacactttggggg-tctggt 336
Query: 138 cagtgaagggggtgggggtgggagcctgaggccacctgctcatgtctcagtagatcagaa 197
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 337 cagtgaagggggtgggggtgggagcctgaggccacctgctcatgtctcagtggatcagga 396
Query: 198 aacctcaagctctacactcagcaaccttcttcctccaatgaggctcca 245
|||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 397 aacctcaagctccacactcagcaaccttcttcctccaatgaggctcca 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 646
Length adjustment: 9
Effective length of query: 238
Effective length of database: 637
Effective search space: 151606
Effective search space used: 151606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
