Query= MSMg01no112_n17.b1 MSMg01no112_n17.b1 CHROMAT_FILE:
MSMg01no112_n17.b1 PHD_FILE: MSMg01no112_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:08 2005
(601 letters)
>mm_chr9_82014302_82015303
Length = 1002
Score = 1096 bits (567), Expect = 0.0
Identities = 591/599 (98%), Gaps = 3/599 (0%)
Strand = Plus / Minus
Query: 5 gaattctcaactgatgaca-attgaatggctgagaagtacctaaagaaatgttcaacatt 63
|||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 gaattctcaactgagga-atattgaatggctgagaagtacctaaagaaatgttcaacatt 699
Query: 64 cttagtcatcagggaaatgcaaatcaaagcaaccctgagattctacctcacacctgtcag 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 698 cttagtcatcagggaaatgcaaatcaaagcaaccctgagattctacctcacaccagtcag 639
Query: 124 aatggctaagataaaatactcagctgacagcagatgctggcaaggatgtggagaaagagc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 aatggctaagataaaatactcagctgacagcagatgctggcaaggatgtggagaaagagc 579
Query: 184 aacactcctccattgctggtgggattgcaagctaagagttttattcttgagtagtatatt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 aacactcctccattgctggtgggattgcaagctaagagttttattcttgagtagtatatt 519
Query: 244 tctatcatttccactccatatccctctccaaataccagctaccactcagtgactctcttg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tctatcatttccactccatatccctctccaaataccagctaccactcagtgactctcttg 459
Query: 304 acctctcttactattataattatgtgttgtaca-acataaacagagaagagggagaaaga 362
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 458 acctctcttactattattattatgtgttgtacacacataaacagagaagagggagaaaga 399
Query: 363 gggggagacagagagaggcagagacagagagacagagaaagggacagagaaagagagaga 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gggggagacagagagaggcagagacagagagacagagaaagggacagagaaagagagaga 339
Query: 423 cagagagcaaatgagaaatatacttgtctagaaaagcagtagtaaaaggcttttcaatag 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 cagagagcaaatgagaaatatacttgtctagaaaagcagtagtaaaaggcttttcaatag 279
Query: 483 gatccatgatttcatcaactgctggcagttggctaggtttatagtgctttatagaattgt 542
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 278 gatccatgatttcatcaactgctggtagttggctaggtttatagtgctttatagaatttt 219
Query: 543 tatagtattgtctgtctcaattacttctctgtgagactttaattggtctcaagtccaat 601
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 tatagtattgtctgtctcaattacttctctgtgagactttaattggtctcaagtccaat 160
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1002
Length adjustment: 10
Effective length of query: 591
Effective length of database: 992
Effective search space: 586272
Effective search space used: 586272
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no112_n17.g1 MSMg01no112_n17.g1 CHROMAT_FILE:
MSMg01no112_n17.g1 PHD_FILE: MSMg01no112_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:08 2005
(468 letters)
>mm_chr9_81911755_81912622
Length = 868
Score = 774 bits (400), Expect = 0.0
Identities = 437/468 (93%), Gaps = 29/468 (6%)
Strand = Plus / Plus
Query: 1 agtctcatagctcctggcgttttcacagatgatggccttggggtttgaatgtgcacagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtctcatagctcctggcgttttcacagatgatggccttggggtttgaatgtgcacagca 260
Query: 61 ggtttgactgcccctggccatgagtgcctgcctttcccagcccacccctccttatctgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtttgactgcccctggccatgagtgcctgcctttcccagcccacccctccttatctgcc 320
Query: 121 tcctctgcccctccctgactctccctgcctcctctgcccctccctgactctccctgcctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctctgcccctccctgactctccctgcctcctctgcccctccctgactctccctgcctc 380
Query: 181 ctctgcccctccctgactctccctgcctcctctgcccctccctgactctccctgcctcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctgcccctccctgactctccctgcctcctctgcccctccctgactctccctgcctcct 440
Query: 241 ctgcccctccctgactctccctgcctcctcctgcccctccctgactctccctgcctcctc 300
| ||||||||||||||||||||||||||||||
Sbjct: 441 c-----------------------------ctgcccctccctgactctccctgcctcctc 471
Query: 301 ctgcccctccctgactctccctgcctcctcctgcccctctttgcctccccctgcctctcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ctgcccctccctgactctccctgcctcctcctgcccctctttgcctccccctgcctctcc 531
Query: 361 ctgcccctctctgtttctgttacttgcacttgactgttttttgcaatgactataacaact 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 532 ctgcccctctctgtttctgttacttgcacttgactgttttttgcaatgactataccaact 591
Query: 421 tctgtgcttggaagattttgagttaaatgaaatgaaaacttttcaaac 468
|||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 592 tctgtgcttggaagattttgaggtaaatgaaatgaaaacttttcaaac 639
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 85
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 4
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space: 392964
Effective search space used: 392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
