BAC Information

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BAC

Clone NameMSMg01-113I22
Chromosome9 (Build37)
Map Location 49,670,413 - 49,755,897
singlet/doubletdoublet
Overlap genenone
Upstream geneHtr3a, Htr3b, Usp28, LOC100042785, Zw10, EG629400, Tmprss5, EG235327, Drd2, Ankk1, Ttc12, Ncam1
Downstream geneEG667975, LOC100042806, LOC100043346, LOC672372, 1600029D21Rik, Pts, Bcdo2, Tex12, Il18, Sdhd, Timm8b, AU019823, Pih1d2, Dlat, Dixdc1, 2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik, Alg9, Ppp2r1b, Snf1lk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113I22.T7 (MSMg01no113_i22.b1)MSMg01-113I22.TJ (MSMg01no113_i22.g1)
ACCAG325665AG325666
length702686
length of high quality
(start - end)
166 (81 - 246)283 (76 - 358)
definitionCHROMAT_FILE: MSMg01no113_i22.b1 PHD_FILE: MSMg01no113_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:01 2005CHROMAT_FILE: MSMg01no113_i22.g1 PHD_FILE: MSMg01no113_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,755,736 - 49,755,897)(49,670,413 - 49,670,692)
sequence
AGCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACAGATGAGATCC
GCGGAATTCACTTGTTTCCTAAAATTAGTGTCGCAGCAAGGCATCTGACT
GTCCGTGACCTCCCCATGTCTCACAATCTTGCCTTTTTCCCTTCTGGTTT
ATTCTGTCCCTGATTTATACCATGATGACTTGACATTCTTCACTTCTTTC
ATCTAGTTATTGATACACATGTCATATAGCCTAGTTAAAAGGAGGAGAAA
GAGAAGGAGGGAGAGAGAAGGTGATAGAGAGAGAAAGGGAAAGAGAGAGA
GGGAGAAGGATGTACGCGTGTGTTTTTTTCTTGTGACCTAGAATAATGAT
ATTACAATGTGAATTTGACCTGCCAACGATGCTAGGGTGTCAAAAAACGA
CCCATTGATCTTGATATTACCCCACCTCTACAGTTTTTGGTTTACTAACT
TCCTACTAAACTTGTGGCGTATATCGATGATGATTATTATCATCTTCCTC
GCTCCGACTTTTAAAATCCCCGGTCCCTTTTTATTATGACCCTAAACATA
ATTTATTTATCCAATATAACACTTTATGCAACAAAAAATCCGTCCGGTTA
CTAAATACGCCAATGCTTTGCTTGACACCACCCTTCATTTTTGTTCCCCT
TGTTCATTTTAATTCCTTCCTTCCTAACCTGTTGTTTTTGTAATTTGTTT
TT
AACCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCATCACTCTCACTTCAGCCCTGCC
CGGGGATCTGGTTATAGAATTCACTTCACAGGGACCCTGCTTCCAGGGAA
AACAGCCTATTGAATTCTCTTTCCTATTGGCTCTGTTTCCTTCTGTGCCC
AGAAGTGAGTTGCAGGGCTGGTAGGCAAATGTATTTGATAAAGAAAATTG
AGCAGCTAGAGGGCATGTGGAGAGTTATCAAAGGGGAAATAGGAAATGAG
GGAGGGAAGGATGCTAGAGTCATAATAACCAGTGAGGAAGGGACAACACA
GACAATAAATTGAGAAGGAGAAACGAAGGTGCAGCCTCCGCATACCATGC
AAGCTTATGCACTCAGAGGAAGTTATACCCGGCCTCACAGAAGTCCCATG
TGTAGTAAATGCAGACTCATGCCTGCTGAAGATGCTGACAATAAATGACT
TTTGAGACACCTAGATAGGNGGCACGTACCACTCACTATAAGGCCCAGGG
CACCTGGCACAACGGATTATGGGAAGCTTGTAACAACAGGGAAGAGAAAA
ATCTATGAAATGCGACCCTGGAGACACAATGAAATCATAAGGTGACAAGG
ACCGAAGATACCTGGTTGAACACAACATGGGACAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_i22.b1 MSMg01no113_i22.b1 CHROMAT_FILE:
MSMg01no113_i22.b1 PHD_FILE: MSMg01no113_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:01 2005
         (166 letters)



>mm_chr9_49755534_49756099
          Length = 566

 Score =  298 bits (154), Expect = 1e-85
 Identities = 160/162 (98%)
 Strand = Plus / Minus

                                                                       
Query: 3   gcagcaaggcatctgactgtccgtgacctccccatgtctcacaatcttgcctttttccct 62
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gcagcaaggcatctgactgtctgtgacctccccatgtctcacaatcttgcctttttccct 305

                                                                       
Query: 63  tctggtttattctgtccctgatttataccatgatgacttgacattcttcacttctttcat 122
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 304 tctggtttattctgtccctgatttatactatgatgacttgacattcttcacttctttcat 245

                                                     
Query: 123 ctagttattgatacacatgtcatatagcctagttaaaaggag 164
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ctagttattgatacacatgtcatatagcctagttaaaaggag 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 566
Length adjustment: 8
Effective length of query: 158
Effective length of database: 558
Effective search space:    88164
Effective search space used:    88164
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no113_i22.g1 MSMg01no113_i22.g1 CHROMAT_FILE:
MSMg01no113_i22.g1 PHD_FILE: MSMg01no113_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:01 2005
         (283 letters)



>mm_chr9_49670213_49670895
          Length = 683

 Score =  495 bits (256), Expect = e-144
 Identities = 274/280 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatcactctcacttcagccctgcccggggatctggttatagaattcacttcacagggac 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 tcatcactctcacttcagccctgcccgggggtctggttatagaattcacttcacagggac 260

                                                                       
Query: 61  cctgcttccagggaaaacagcctattgaattctctttcctattggctctgtttccttctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgcttccagggaaaacagcctattgaattctctttcctattggctctgtttccttctg 320

                                                                       
Query: 121 tgcccagaagtgagttgcagggctggtaggcaaatgtatttgataaagaaaattgagcag 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 tgcccaggagtgagttgcagggctggtaggcaaatgtatttgataaagaaaattgggcag 380

                                                                       
Query: 181 ctagagggcatgtggagagttatcaaaggggaaataggaaatgagggagggaaggatgct 240
           |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 ctagagggcacgtggagagttatcaaaggggaaataggaattgagggagggaaggatgct 440

                                                   
Query: 241 agagtcataataaccagtgaggaagggacaacacagacaa 280
           ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 agagtcagaataaccagtgaggaagggacaacacagacaa 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)