BAC Information

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BAC

Clone NameMSMg01-113L05
Chromosome9 (Build37)
Map Location 32,464,469 - 32,464,742
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666576, Barx2, LOC100042266, Tpi-rs4, LOC666619, LOC666622, Grit, Kcnj5, Kcnj1, Fli1
Downstream geneLOC669759, LOC100041398, Ets1, LOC100041426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113L05.T7 (MSMg01no113_l05.b1)MSMg01-113L05.TJ (MSMg01no113_l05.g1)
ACCAG325770AG325771
length704710
length of high quality
(start - end)
278 (40 - 317)---
definitionCHROMAT_FILE: MSMg01no113_l05.b1 PHD_FILE: MSMg01no113_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:12 2005CHROMAT_FILE: MSMg01no113_l05.g1 PHD_FILE: MSMg01no113_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CTCTTATCACCGCCCAAAGAATTCTATAGACATGCTTGGCAGTCCGAGAA
AGGAAGAAGGAAGATGCCTTACACAGCATCTTGTAAGACCCAGAGACTTC
CGGATCTATTAGAAGTCTGAGGGATGTCTTATGCATTGCAGTATTTTATA
ATCTTCACCGCAGGAGAACTCAGTAATTGCTCAACCTCAGGAACTGCCTA
AGCCCCACTTTTTCCTTCTGAATAGTGGGGTATATGGGAGGACAACACTG
AGGGTGCCTTTGGGAAGCATAAGGACACAGGGTGAAGGCTCAATACGTGA
CAGGGACACTGCCATGAACACACATTCTGACTCTGACAACTTTTGGGCCA
GTGGACTCGCCCCACTCTCCCAAGGGGCAGGTGATCTGAACATTGCCAGG
TACAACGGCAGGAGAAGGGATGTGTTCAGGTCACCAGAATGCAAAGGGTG
ACGTTGGGAGGAACTTGCGCATCATCAGGGTCTTCTCCTCCGGGAAGGGA
AGCTTATGGAGGTCAAGTGACGGGGCAGAGGGGATACGCGTCTGTATGGG
GAGAATAGGACGGACACACAGAGAGCCTGGGTGAGTAGGCTCTGTGTTCT
TGGGAGAGGATGCGGGGGGCTGACCTGCCCAGAACGTGGGCGAAGGGATG
CTAA
TGCTGTGGGTAGGCTGGCGGCCGCCTGGTTGCAAAACGGGGGTGAANTAT
AGAAGTTTCCGCGAAATTCTCTCGAATGTCTGACTCTGTGCCATGGTCTC
TGTATTTCCCACTCACGGAGGATATGGGGTACTGCTTGGGAGGCCTCTCA
TCCGGGCTATTCTTGAGGTAGGGGTCGAGGCTTCTCTGAGATCGGGGAGA
GTGATGTATAGAACCACGTGAGAAGACTGGTCCCTGGCCAGGCGCAGGGG
GTCCTAACCTGGGGGCCTTGACCTCAGGGAGCCTGTCGCTGATAGCTGCG
GGCTGGGGGGTGCTTTCTTTAAGGGAGACGGAAGGGAGGTCTTGGGGTGG
GGGTGGTGTTGAAGAGCTCCTTCTTGGGGTCTCTCTGGGGGGGGGGGAGT
AGGGCGGGCGGCCCGCGGAGGGCACTAGGGGGGGGGGGCCAAGAGGGGCC
AAAAGGTAAGAAAAAAGTTATCGACTAGAGCGGGAGAATAAATTAAATCA
TAACTCTTCCATTTTTGTTTAGTGAGAGACAAGGGGCAATTGGGGGGCGC
GCGGCAAAGAGGGAGGAGATGAAAATAGAAAAGGTAGGAGGACATTAAAT
TTAAGCCTTTATTAGGAGCACGGGGGGGATAACCTGAATATCGGGGTAGG
GGCGATCCACCCTTCCCTATCCAGTGGCGCATTGAGGGATCCTTTCTCGA
AAAGATTGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_l05.b1 MSMg01no113_l05.b1 CHROMAT_FILE:
MSMg01no113_l05.b1 PHD_FILE: MSMg01no113_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:12 2005
         (278 letters)



>mm_chr9_32464265_32464942
          Length = 678

 Score =  476 bits (246), Expect = e-139
 Identities = 267/274 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctcttatcaccgcccaaagaattctatagacatgcttggcagtccgagaaagg 64
           ||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttcttagcactgcccaaagaattctatagacatgcttggcagtccgagaaagg 264

                                                                       
Query: 65  aagaaggaagatgccttacacagcatcttgtaagacccagagacttccggatctattaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagaaggaagatgccttacacagcatcttgtaagacccagagacttccggatctattaga 324

                                                                       
Query: 125 agtctgagggatgtcttatgcattgcagtattttataatcttcaccgcaggagaactcag 184
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtctgtgggatgtcttatgcattgcagtattttataatcttcaccgcaggagaactcag 384

                                                                       
Query: 185 taattgctcaacctcaggaactgcctaagccccactttttccttctgaatagtggggtat 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 385 taattgctcaacctcaggaactgcctaagccccactttttccttctgaatagtgggttat 444

                                             
Query: 245 atgggaggacaacactgagggtgcctttgggaag 278
           ||||||||| ||||||||| ||||||||||||||
Sbjct: 445 atgggaggaaaacactgagtgtgcctttgggaag 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)