Query= MSMg01no113_p03.b1 MSMg01no113_p03.b1 CHROMAT_FILE:
MSMg01no113_p03.b1 PHD_FILE: MSMg01no113_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:31 2005
(652 letters)
>mm_chr9_15900455_15901507
Length = 1053
Score = 1162 bits (601), Expect = 0.0
Identities = 637/649 (98%), Gaps = 1/649 (0%)
Strand = Plus / Minus
Query: 5 gaattctaggccaactaaatggctgaggagaaaaatggcttccccgaagtctgatcaact 64
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 853 gaattctaggccaacgaaatggctgaggagaaaaatggcttcccccaagtctgatcaact 794
Query: 65 gagtctaatgccctggatcctcttaggaaggcgagagctgggtcctgcaagaatccatga 124
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 gagtctaatgccctggaccctcttaggaaggcgagagctgggtcctgcaagaatccatga 734
Query: 125 ctttcccatggttgatgtgagacatgcacccctgtgcatacataatgcattaataatgta 184
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 cttttccatggttgatgtgagacatgcacccctgtgcatacataatgcattaataatgta 674
Query: 185 gcacactttttaaaaatgccgattccagagtg-tttcgggaagtgtgacatgactttgtt 243
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 673 gcacactttttaaaaatgctgattccagagtgttttcgggaagtgtgacatgactttgtt 614
Query: 244 ttagcacacagccactgctagtaacacaacgttgcaaagcagaagacatgttggacaaac 303
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 613 ttagcacacagccactgctagtaacacaacgttgcaaagcagaagacctgttggacaaac 554
Query: 304 gctaatgagcggttacatcggccatttgcaattagaacatcaaaatggcggttgttaaaa 363
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gctaatgagcggttacataggccatttgcaattagaacatcaaaatggcggttgttaaaa 494
Query: 364 ttaaattgcttcataaattgtttgtcttgaatccattaaatattctcctgagacttctct 423
||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 493 ttaaattgcttcacaaattgtttgtcttgaagccattaaatattctcctgagacctctct 434
Query: 424 atcctcttaatttacctgggtaacagaaaggtaaaccgcaaccagccatggcgctatcac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 atcctcttaatttacctgggtaacagaaaggtaaaccgcaaccagccatggcgctatcac 374
Query: 484 agattttcagacaggtggcacagaaaaagaatgagattttacactacatacctaaattta 543
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 agactttcagacaggtggcacagaaaaagaatgagattttacactacatacctaaattta 314
Query: 544 aggcaaaagcttggattgtgtggaaattaactgtaaaatgtgtgtcgtttcttgctcccc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aggcaaaagcttggattgtgtggaaattaactgtaaaatgtgtgtcgtttcttgctcccc 254
Query: 604 cccccttttataattgctaacaggattctgataacatgcaaagctttcc 652
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 cccccttttataattgctaacaggattctgataacatgcaaagctttcc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1053
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1043
Effective search space: 669606
Effective search space used: 669606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no113_p03.g1 MSMg01no113_p03.g1 CHROMAT_FILE:
MSMg01no113_p03.g1 PHD_FILE: MSMg01no113_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:31 2005
(618 letters)
>mm_chr9_15819482_15820504
Length = 1023
Score = 1062 bits (549), Expect = 0.0
Identities = 603/623 (96%), Gaps = 9/623 (1%)
Strand = Plus / Plus
Query: 1 tgatgggaggagaaatgtctgggaggctcctgatctaacgaa-atctttag-aaaaaaag 58
||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||
Sbjct: 201 tgatgggaggagaaatgtctgggagtctcctgatctaacgaacatctttagaaaaaaaag 260
Query: 59 -ataacttgcgtttctaccttttgaaaatatgtaaacagaaa---atcaagaaagaagac 114
||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||
Sbjct: 261 cataacttgcgtttctaccttttgaaaatatgtaaacagaaagtcaacaagaaaggagac 320
Query: 115 atactgtctaggtaaaatctgtgttctaagtaagtagggcagtgagggactgactctaag 174
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 atactgtctaggtaaaatctgtgttctaagtaagtagggcagtgagggacggactctaag 380
Query: 175 cagtcctagtgatgaaatctacagggtgaaggtccaggctaggtttaggagtagggtcat 234
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtcctagtgatgaaatctacagtgtgaaggtccaggctaggtttaggagtagggtcat 440
Query: 235 agatttttctcactccaatgccaattgacataggtcagactcacatgatagcttgtgttg 294
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 441 agatttttctcactccaatgccaattgacataggtcagact--catgctagcttgtgttg 498
Query: 295 ggcttgagaattttggaggctatgaaaggagatgtttatcgttagacttggttgtggatc 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ggcttgagaattttggaggctatgaaaggagatgtttatcgttagacttggttgtggatc 558
Query: 355 ccacaaggacaggcttgcttttctagctttacaaacccaaagcatgccctgaataacaga 414
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ccacaaggataggcttgcttttctagctttacaaacccaaagcatgccctgaataacaga 618
Query: 415 atatgttagaaaatatcacaaaatattatatccacagtccctgaagcaaatctacttagc 474
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 619 atatgttagaaaatatcacaaaatatcatatccacagtccctgaagcaaatctacttagc 678
Query: 475 ttttagattattatttggcccagactatatctttttt-cttctcctataacaaaaaaggt 533
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 679 ttttagattattatttggcccagactatatctttttttcttctcctataacaaaaaaggt 738
Query: 534 cactcaagtaatttatagatatcagtatgttattccaattttacactgagtaccagattg 593
||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 739 cactcaattaatttataggtatcagtgtgttattccaattttacactgagtaccagattg 798
Query: 594 tattaataaagtatatatgtgtt 616
|||||||||||||||||||||||
Sbjct: 799 tattaataaagtatatatgtgtt 821
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1023
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1013
Effective search space: 615904
Effective search space used: 615904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
