Query= MSMg01no113_p05.b1 MSMg01no113_p05.b1 CHROMAT_FILE:
MSMg01no113_p05.b1 PHD_FILE: MSMg01no113_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:32 2005
(208 letters)
>mm_chr9_15900900_15901507
Length = 608
Score = 356 bits (184), Expect = e-103
Identities = 199/204 (97%)
Strand = Plus / Minus
Query: 5 gaattctaggccaactaaatggctgaggagaaaaatggcttccccgaagtctgatcaact 64
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 408 gaattctaggccaacgaaatggctgaggagaaaaatggcttcccccaagtctgatcaact 349
Query: 65 gagtctaatgccctggatcctcttaggaaggcgagagctgggtcctgcaagaatccatga 124
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gagtctaatgccctggaccctcttaggaaggcgagagctgggtcctgcaagaatccatga 289
Query: 125 ctttcccatggttgatgtgagacatgcacccctgtgcatacataatgcattaataatgta 184
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 cttttccatggttgatgtgagacatgcacccctgtgcatacataatgcattaataatgta 229
Query: 185 gcacactttttaaaaatgccgatt 208
||||||||||||||||||| ||||
Sbjct: 228 gcacactttttaaaaatgctgatt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 608
Length adjustment: 9
Effective length of query: 199
Effective length of database: 599
Effective search space: 119201
Effective search space used: 119201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no113_p05.g1 MSMg01no113_p05.g1 CHROMAT_FILE:
MSMg01no113_p05.g1 PHD_FILE: MSMg01no113_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:32 2005
(586 letters)
>mm_chr9_15819481_15820469
Length = 989
Score = 1009 bits (522), Expect = 0.0
Identities = 573/592 (96%), Gaps = 9/592 (1%)
Strand = Plus / Plus
Query: 1 atgatgggaggagaaatgtctgggaggctcctgatctaacgaacatctttag-aaaaaaa 59
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 201 atgatgggaggagaaatgtctgggagtctcctgatctaacgaacatctttagaaaaaaaa 260
Query: 60 gcataacttgcgtttctaccttttgaaaatatgtaaacagaaa---atcaagaaagaaga 116
||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||
Sbjct: 261 gcataacttgcgtttctaccttttgaaaatatgtaaacagaaagtcaacaagaaaggaga 320
Query: 117 catactgtctaggtaaaatctgtgttctaagtaagtagggcagtgagggactgactctaa 176
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 catactgtctaggtaaaatctgtgttctaagtaagtagggcagtgagggacggactctaa 380
Query: 177 gcagtcctagtgatgaaatctacagggtgaaggtccaggctaggtttaggagtagggtca 236
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagtcctagtgatgaaatctacagtgtgaaggtccaggctaggtttaggagtagggtca 440
Query: 237 tagatttttctcactccaatgccaattgacataggtcagactcacatgatagcttgtgtt 296
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 441 tagatttttctcactccaatgccaattgacataggtcagact--catgctagcttgtgtt 498
Query: 297 gggcttgagaattttggaggctatgaaaggagatgtttatcgttagacttggttgtggat 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gggcttgagaattttggaggctatgaaaggagatgtttatcgttagacttggttgtggat 558
Query: 357 cccacaaggacaggcttgcttttctagctttacaaacccaaagcatgccctgaataacag 416
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cccacaaggataggcttgcttttctagctttacaaacccaaagcatgccctgaataacag 618
Query: 417 aatatgttagaaaatatcacaaaatattatatccacagtccctgaagcaaatctacttag 476
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 619 aatatgttagaaaatatcacaaaatatcatatccacagtccctgaagcaaatctacttag 678
Query: 477 cttttagattattatttggcccagactatatctttttt-cttctcctataacaaaaaagg 535
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 679 cttttagattattatttggcccagactatatctttttttcttctcctataacaaaaaagg 738
Query: 536 tcactcaagtaatttatagatatcag-gatgttattccaattttacactgag 586
|||||||| |||||||||| |||||| | |||||||||||||||||||||||
Sbjct: 739 tcactcaattaatttataggtatcagtg-tgttattccaattttacactgag 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 989
Length adjustment: 10
Effective length of query: 576
Effective length of database: 979
Effective search space: 563904
Effective search space used: 563904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
