BAC Information

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BAC

Clone NameMSMg01-114C17
Chromosome9 (Build37)
Map Location 5,544,366 - 5,544,713
singlet/doubletsinglet
Overlap genenone
Upstream geneGria4, EG664889, Casp1, Casp4, Casp12
Downstream geneLOC547033, LOC100039361, LOC100039372, LOC664957, LOC676037, Pdgfd, Ddi1, EG664919
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114C17.T7 (MSMg01no114_c17.b1)MSMg01-114C17.TJ (MSMg01no114_c17.g1)
ACCAG326118AG326119
length746778
length of high quality
(start - end)
640 (46 - 685)358 (75 - 432)
definitionCHROMAT_FILE: MSMg01no114_c17.b1 PHD_FILE: MSMg01no114_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:47 2005CHROMAT_FILE: MSMg01no114_c17.g1 PHD_FILE: MSMg01no114_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTATAAATATTGGATGTTAGCCCTCTATTGGACATAAGGTTGGC
AAAGATCTTTTCTGAATCTGTTGGTTGCCATTTTTTCCTATTGACAGTGT
CCTTTGCCTTACAGAACCTTTCCAATTTTATGAGGTCCCATTTGTCTATT
ATTGACTTTAGGGCAAAAGTCATTGGTGTTCTGTTCAGTAAAATATCCCC
TGTGCCCATGTGTTCGAGGTTCTTCCCTACTTTATTTTCTATTAGTTTCG
GTTTATCTGGTTTTATGTGGATGTCCTTAATCCACTTGAAATTCAACTTT
GTATAAGAAGATGAGAATGGATTTGTGTGCATTCTTCTGCATGATAACTG
CCATTTGAACCAACATCATTTGTTGAAAATGCTGTCTTTTTTCCACTGGA
TGGTTTTAGCTCCTTTGTCAAAACAAATATGTAGTTACCATACGTGTGTG
GGTCCATTTTTGGGTCTTCAATTCTATTCCATTCTTTGTCACTTTTAATA
TTCTTTCTTTGTTCTGTAGATTGAGAATTAAGTATTAATAAAATAGTCCT
TCAGTGAGTTTGCTGCCCACCTCAGAACTCTATGTTCCCGAATGAAAGAC
ATACATACAGCCTTTATATATTAATGGGTCTTAAACAGCACAATAGCTGG
ACTTTTGCCTACCCCCATGCAGTTAATCTGTAGTTATTACTTACTN
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTATGACAGACATTAATTAGACCACA
CACTTTTATATTAGAACTTAGACTTTTGTGGGATTCAAAAAAACAAACAC
ATATCAGGAAGATTTATTATTCTTTCAGACTTCAATGTGAGGTAAAATCT
GATCAGAAATGAAAAACAAGGTTAAAAGTTTTTATTTATTTTCATACTTG
GCTATGCAATATCCATTTACAATAAATATGCATAGTTGTAATTAGCTGCA
TCTATTGCATATACCAGTAAAGTATATCTGAAGTTAATATTTAGAAGATT
TGTAAGGCTCTATGAAGTTACATAATACAATAATTTGAGTGTGTGTGTGT
GTGTGTGTGTGTGTGTCGTGTGTGTGTGCCCCCCCCCNNNNCCCCTCCCC
CCCCCCCCCCCNNCCCCCCCCCCTCCCCCTTCCTTCCCCCCTCTCCCTCT
TCCTCTCCCTTCTTTTTCCCTTCCCCCTCTCCCCCCTCCTTTTTTTTTTC
CCCTTCCCCTCTCTTCTCCCTCCTCCCCCCCCTCCCTTTTTCCCTTTTCC
CTCTCTCCCCTTTTCTTTCTTTTTTTCCCTCCCCTCCTTCCCCTCCCTCT
TTTTTTCCCCTTTCTTTTTTTTTTTCCCCTCCCCCCTTCCCCCCTCCTTC
TTTTTCCCCCCCTTTTTCTTTTCCCCCCCCCCCCCCTTCTTTTCCCCCCT
CCTTCCTTTTCCCCCCCCTTTCCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_c17.g1 MSMg01no114_c17.g1 CHROMAT_FILE:
MSMg01no114_c17.g1 PHD_FILE: MSMg01no114_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:48 2005
         (358 letters)



>mm_chr9_5544200_5544957
          Length = 758

 Score =  659 bits (341), Expect = 0.0
 Identities = 347/349 (99%), Gaps = 1/349 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttatgacagacattaattagaccacacacttttatattagaacttagacttttgtgggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ttatgacagacattaattagaccacacacttttatattagaacttagacttttgtgggat 455

                                                                       
Query: 61  tcaaaaaaacaaacacatatcaggaagatttattattctttcagacttcaatgtgaggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tcaaaaaaacaaacacatatcaggaagatttattattctttcagacttcaatgtgaggta 395

                                                                       
Query: 121 aaatctgatcagaaatgaaaaacaaggttaaaagtttttatttattttcatacttggcta 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 394 aaatctgatcagaaatgaaaaacaaggttaaaagtttttatttattctcatacttggcta 335

                                                                       
Query: 181 tgcaatatccatttacaataaatatgcatagttgtaattagctgcatctattgcatatac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgcaatatccatttacaataaatatgcatagttgtaattagctgcatctattgcatatac 275

                                                                       
Query: 241 cagtaaagtatatctgaagttaatatttagaagatttgtaaggctctatgaagttacata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 cagtaaagtatatctgaagttaatatttagaagatttgtaaggctctatgaagttacata 215

                                                            
Query: 301 atacaataatttgagtgtgtgtgtgtgtgtgtgtgtgtgtgtcgtgtgt 349
           |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 214 atacaataatttgagtgtgtgtgtgtgtgtgtgtgtgtgtgt-gtgtgt 167


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 758
Length adjustment: 9
Effective length of query: 349
Effective length of database: 749
Effective search space:   261401
Effective search space used:   261401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)